Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G21
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical pr... 208 2e-54
AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical ... 41 8e-04
U58735-4|AAC48144.1| 479|Caenorhabditis elegans Hypothetical pr... 30 1.9
U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of c... 28 5.7
AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome... 28 5.7
Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical ... 28 7.5
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 28 7.5
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ... 28 7.5
AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical ... 27 9.9
AF000298-7|AAC48256.1| 239|Caenorhabditis elegans Hypothetical ... 27 9.9
>U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical
protein R05F9.6 protein.
Length = 568
Score = 208 bits (509), Expect = 2e-54
Identities = 108/188 (57%), Positives = 130/188 (69%), Gaps = 6/188 (3%)
Frame = +2
Query: 158 VMVDTKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRY 334
V TKP+ GQKPGTSGLRK+V F Q+NYTENF+Q ILD S GS LVVGGDGR+
Sbjct: 6 VETPTKPFAGQKPGTSGLRKRVPEFQQQNYTENFVQAILDAGLGSKKKGSQLVVGGDGRF 65
Query: 335 LVKEVVDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIRKYK----TLGGIVLTASHNPG 502
L E + IIKI+A NG+S+LIVGQNG LSTPA+S +IRK GGI+LTASHNPG
Sbjct: 66 LSMEATNVIIKIAAANGLSRLIVGQNGFLSTPALSNLIRKGHEGRVVDGGIILTASHNPG 125
Query: 503 GVDEDFGIKFNCSNGGPASDATTDAIYKLSTSIKQYKIVPDLNCAIDKIDVHNFKV-XQR 679
G DFGIKFNC NGGPA D TDAIY+++T I +Y I DL C ++ + + +
Sbjct: 126 GPKGDFGIKFNCENGGPAPDQVTDAIYQITTKIDKYLIAKDLECDFTQVGRYEYDIEGVG 185
Query: 680 QFTVEVID 703
F V+VID
Sbjct: 186 HFVVDVID 193
>AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical
protein Y43F4B.5b protein.
Length = 459
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +2
Query: 308 LVVGGDGRYLVKEVVDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 487
+ +G DGRY + + + N + + + + TP VS+ K G+++TA
Sbjct: 93 VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150
Query: 488 SHNPGGVDEDFGIKFNCSNG 547
SHNP ED G K SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167
>AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical
protein Y43F4B.5a protein.
Length = 595
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +2
Query: 308 LVVGGDGRYLVKEVVDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTA 487
+ +G DGRY + + + N + + + + TP VS+ K G+++TA
Sbjct: 93 VAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSE--VSPTPVVSWATIKLGCDAGLIITA 150
Query: 488 SHNPGGVDEDFGIKFNCSNG 547
SHNP ED G K SNG
Sbjct: 151 SHNP---KEDNGYKAYWSNG 167
>U58735-4|AAC48144.1| 479|Caenorhabditis elegans Hypothetical
protein F20B4.3 protein.
Length = 479
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 561 SEAGPPLLQLNFMPKSSSTPPGLWEA 484
SEA P L + F P+ +S PPGL EA
Sbjct: 130 SEASPILERQRFTPQQTSIPPGLAEA 155
>U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of
calcineurin protein 1 protein.
Length = 207
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 549 PPLLQLNFMPKSSSTPPGLWEAVRTIPPRVLYF 451
PP L+ F+ +PP WE + +PP V F
Sbjct: 119 PPPLEKQFLISPPCSPPVGWEQTKDMPPVVCNF 151
>AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome
candidate region1-like protein protein.
Length = 207
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 549 PPLLQLNFMPKSSSTPPGLWEAVRTIPPRVLYF 451
PP L+ F+ +PP WE + +PP V F
Sbjct: 119 PPPLEKQFLISPPCSPPVGWEQTKDMPPVVCNF 151
>Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 455 YKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATTDAIYKLSTSIKQYKIVP 622
Y T G+ L NP ++ ++FN S S+A + + K S+ KQ P
Sbjct: 425 YTTQNGLRLHRQRNPACMEVSNALEFNTSLNTSISEALSGPLSKNSSPTKQMVSAP 480
>AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 455 YKTLGGIVLTASHNPGGVDEDFGIKFNCSNGGPASDATTDAIYKLSTSIKQYKIVP 622
Y T G+ L NP ++ ++FN S S+A + + K S+ KQ P
Sbjct: 425 YTTQNGLRLHRQRNPACMEVSNALEFNTSLNTSISEALSGPLSKNSSPTKQMVSAP 480
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 311 VVGGDGRYLVKEV--VDKIIKISAXNGVSKLIVGQNGILSTPAVSYIIR 451
VV GDGR +V + D++I + + + G+L+TP YIIR
Sbjct: 15 VVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIR 63
>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
protein Y18H1A.3 protein.
Length = 1258
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 657 CTSILSMAQFKSGTILYCFIEVLSL 583
C+SI S+AQF S T+L + SL
Sbjct: 771 CSSIASLAQFSSTTLLQALLRAASL 795
>AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical
protein T11F1.8 protein.
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 272 LDVNKTSLIGSTLVVGGDGRYLVK 343
L N TS++G +V DGRYL K
Sbjct: 346 LPENCTSIVGDVVVDANDGRYLYK 369
>AF000298-7|AAC48256.1| 239|Caenorhabditis elegans Hypothetical
protein W03D2.2 protein.
Length = 239
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 218 KVKVFVQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKIS 373
K+K + ++T NF + I+ L ++GGD +L+ + II ++
Sbjct: 56 KIKDLICFSFTSNFAKNIVGALNLKLYDIKCMMGGDAHHLLFNICKNIIYVT 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,397
Number of Sequences: 27780
Number of extensions: 366754
Number of successful extensions: 984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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