Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G15
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   4.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.3  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 633 SKTVVSQSLTQSHPAQIAPLLAYAGHGLD 719
           S+ +    L Q+ P QIAP+L Y G  LD
Sbjct: 393 SQVIDQFKLIQAAPGQIAPILQYFGTLLD 421


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 139 PRTRXPRSSEPTASQPTXSEPTASQPT 219
           PRT  P       S+P+ S+P+ SQP+
Sbjct: 80  PRTASPAVGNQDYSKPSYSQPSYSQPS 106


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 606 GHAAYAAPASKTVVSQSLTQSHPAQIAPLLAYAGHGLDYAHGLDYGHGLDYAHGLPHGLP 785
           G++ Y    SK   S   T     ++   +   G  +D       G G+ + H L +G P
Sbjct: 166 GNSTYGTDPSKPWASMKHTFWPRTRVEGSIVARGRVVDVT-----GPGM-FVHALQNGKP 219

Query: 786 HGLAHGW 806
           H LA  W
Sbjct: 220 HHLASSW 226


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 511 PPWSPTLRMAPLPLSPTLVMPELTQVMALQCSDMP 615
           PP +P+L  A  P+ P +  P L+Q      S  P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,134
Number of Sequences: 5004
Number of extensions: 16643
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)