Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G15
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0570 - 4231100-4232560 30 2.0
09_04_0179 - 15366119-15366916 30 2.6
09_03_0051 + 11902322-11903125 30 2.6
04_01_0464 + 6006021-6006082,6006249-6006519 29 3.4
12_02_1243 + 27300978-27301682 29 4.5
09_04_0181 + 15371687-15372011,15372105-15372214 29 4.5
01_01_0073 + 555485-556315 29 4.5
02_05_0059 - 25482207-25482271,25482432-25482651 29 6.0
08_01_0229 + 1834102-1834358,1834442-1834901 28 7.9
06_01_0962 - 7407829-7408025,7408219-7408279 28 7.9
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 28 7.9
>01_01_0570 - 4231100-4232560
Length = 486
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 677 GGMGLGQRLRDHSLAGGSGV-RGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 507
GG+G G L + GGSG G + A V GI G G GA +G GG
Sbjct: 205 GGVGGGGELGGGGMGGGSGFGGGAGGGFGAGGGVGGGIGVGGGMGGGASGGIGGGAGG 262
>09_04_0179 - 15366119-15366916
Length = 265
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 705 GHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHG 803
GHG A G YG G HG G +G HG
Sbjct: 188 GHGQRNASGSGYGDGHGEGHGYGQGSGYGEGHG 220
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 705 GHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHGW 806
G G Y G GHG A G +G HG HG+
Sbjct: 176 GSGSGYGEGHGEGHGQRNASGSGYGDGHGEGHGY 209
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 136 QPRTRXPRSSEPTASQPTXSEPTASQP 216
+PRT PR P A+ P SEP P
Sbjct: 88 EPRTPTPRKRSPVAAPPAASEPQTPTP 114
>04_01_0464 + 6006021-6006082,6006249-6006519
Length = 110
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 566 TSVGDNGSGAIRSVGDHGGGYVTNQ 492
+ VG +G G+ R GDHG G T Q
Sbjct: 40 SGVGGDGDGSERGTGDHGAGSGTEQ 64
>12_02_1243 + 27300978-27301682
Length = 234
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 687 PLLAYAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLA-HG 803
PLL++ HG A G Y +G HG HG A HG
Sbjct: 153 PLLSFQVHGFPDATAYGQPAGFPYGYGHGHGHGHGHAFHG 192
>09_04_0181 + 15371687-15372011,15372105-15372214
Length = 144
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 696 AYAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHG 803
+YAG G Y G YG G GL G +G G
Sbjct: 104 SYAGSGSGYGEGGGYGRGSGNGSGLEFGEGYGYGSG 139
>01_01_0073 + 555485-556315
Length = 276
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 680 LGGMGL-GQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 507
L G GL G D ++ G GV G C + G++ G G +S GD GGG
Sbjct: 85 LAGEGLVGLPEGDGAIGGAHGVLGDLRCGGGGDCTTGGVSERA-GGLGGGKSAGDDGGG 142
>02_05_0059 - 25482207-25482271,25482432-25482651
Length = 94
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 689 RRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGG 510
RR GG GQ++ D GG ++G + S G ++ G G G++ G++GG
Sbjct: 19 RRRRGG---GQQVND---GGGGSMKGGGDSGSLARGGDGGGSTWGGGGGGSVGRGGNNGG 72
Query: 509 G 507
G
Sbjct: 73 G 73
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 680 LGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGD 519
L G + +R D L G G +S T + + VGD G+G VG+
Sbjct: 85 LRGRAVAERRDDDGLKWGGGEDAVSATRWGRTAMGDAVEEVGDGGTGVDGVVGE 138
>06_01_0962 - 7407829-7408025,7408219-7408279
Length = 85
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 680 LGGMGLGQRLRDHSLAGGSG-VRGMSEHWSAITCVSSGITSVG 555
+GGM G +++GG G V G S + S+I CV G SVG
Sbjct: 36 IGGMRGGIAGVRGNVSGGRGDVNGHSHNISSIICVGGGRDSVG 78
>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
Length = 405
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -3
Query: 674 GMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 504
G G G + G G S HW A C S + G G GA G GGGY
Sbjct: 96 GSGSGSGGAQVARGGACFKCGDSCHW-ARECPQSVPATGGGGGGGAFGGSGGGGGGY 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,113
Number of Sequences: 37544
Number of extensions: 173165
Number of successful extensions: 1087
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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