Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   318   9e-88
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   317   1e-87
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  318 bits (780), Expect = 9e-88
 Identities = 149/247 (60%), Positives = 176/247 (71%)
 Frame = +1

Query: 124 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 303
           VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 8   VSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 304 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXX 483
           WGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH              
Sbjct: 67  WGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISS 126

Query: 484 XXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKS 663
                       ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S
Sbjct: 127 AVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANS 186

Query: 664 QRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHL 843
           ++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE            APGGHL
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246

Query: 844 GRFVIWT 864
           GRFVIWT
Sbjct: 247 GRFVIWT 253


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  317 bits (779), Expect = 1e-87
 Identities = 148/247 (59%), Positives = 176/247 (71%)
 Frame = +1

Query: 124 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 303
           VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 8   VSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 304 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXX 483
           WGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH              
Sbjct: 67  WGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIAS 126

Query: 484 XXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKS 663
                       ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S
Sbjct: 127 AVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 186

Query: 664 QRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHL 843
           ++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE            APGGHL
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246

Query: 844 GRFVIWT 864
           GRFVIWT
Sbjct: 247 GRFVIWT 253


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 272
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,776
Number of Sequences: 5004
Number of extensions: 66214
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)