Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G11
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   140   9e-35
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.2  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  140 bits (340), Expect = 9e-35
 Identities = 70/124 (56%), Positives = 86/124 (69%)
 Frame = +1

Query: 10  DDDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 189
           +D++DLFGS  E E              YN KKA KP  + KS + LDVKPWDDET M  
Sbjct: 88  EDEIDLFGSDEE-EDPEAERIKAERVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDE 146

Query: 190 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSV 369
           LE+AVRSI  DGL+WG +KLVP+ +G++K QI+ VVEDDKVS++ L EE+E  EDYVQS 
Sbjct: 147 LEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQST 206

Query: 370 DIAA 381
           DIAA
Sbjct: 207 DIAA 210


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 402  SVLDFVERSNIDTLYIVFIFLDFLSKPINRNLIIFNNTGNLQLMDTISQR 253
            SVLD +   N  T  I+F     + KP+N +LI+ N TG L  +  +  R
Sbjct: 970  SVLDDIVDFNHLTWSILFGENYIILKPLNTDLIV-NKTGKLVALRPLVNR 1018


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 316  IDWLTEEIEKNEDYVQSV 369
            I+WL EE ++ E+Y+Q++
Sbjct: 980  IEWLLEEGKRAEEYIQNL 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,235
Number of Sequences: 5004
Number of extensions: 27381
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)