Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G11
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 118 4e-27
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 118 4e-27
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 113 6e-26
08_01_0778 + 7548307-7549220,7551682-7552021 29 2.3
06_03_0860 + 25484826-25485758,25486155-25486406 29 2.3
07_03_1086 + 23858419-23859423,23859527-23859610 28 4.0
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 28 4.0
04_04_1097 - 30859963-30860302,30862130-30863058 28 4.0
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951 27 7.1
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 9.3
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 118 bits (283), Expect = 4e-27
Identities = 63/128 (49%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Frame = +1
Query: 10 DDDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 189
DDDVDLFG E E K + K KS+++LDVKPWDDETDM
Sbjct: 105 DDDVDLFGEETEEEKKAAEERAAA------VKASGKKKESGKSSVLLDVKPWDDETDMTK 158
Query: 190 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYV 360
LE+AVR++ +GLLWGA+KLVP+ YGI KLQI + DD VS+D L E+ E +Y+
Sbjct: 159 LEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYI 218
Query: 361 QSVDIAAF 384
QS DI AF
Sbjct: 219 QSCDIVAF 226
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 118 bits (283), Expect = 4e-27
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Frame = +1
Query: 10 DDDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 189
DDDVDLFG E E K + K KS+++LDVKPWDDETDMA
Sbjct: 121 DDDVDLFGEETEEEKKAAEERAAA------VKASGKKKESGKSSVLLDVKPWDDETDMAK 174
Query: 190 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYV 360
LE+AVR++ +GLLWGA+KLVP+ YGI KLQI + DD VS+D L E+ E +++
Sbjct: 175 LEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFI 234
Query: 361 QSVDIAAF 384
QS DI AF
Sbjct: 235 QSCDIVAF 242
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 113 bits (273), Expect = 6e-26
Identities = 62/128 (48%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Frame = +1
Query: 10 DDDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 189
DDD+DLFG E + +K + K KS+++LDVKPWDDETDM
Sbjct: 101 DDDLDLFGDETEEDKKAADERAA-------SKASSKKKESGKSSVLLDVKPWDDETDMKK 153
Query: 190 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYV 360
LE+AVRS+ +GL WGA+KLVP+ YGI KLQI + DD VS+D L EE E ++V
Sbjct: 154 LEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFV 213
Query: 361 QSVDIAAF 384
QS DI AF
Sbjct: 214 QSCDIVAF 221
>08_01_0778 + 7548307-7549220,7551682-7552021
Length = 417
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 378
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 261 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKVDVY 320
Query: 379 AF 384
+F
Sbjct: 321 SF 322
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 378
R + + LL V +A +G L+ +C + +K + W+ E+ K + Y + VD+
Sbjct: 221 RDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVY 280
Query: 379 AF 384
+F
Sbjct: 281 SF 282
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 259 AYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAA 381
A GIH+L +SC E +I L E+E + S+ AA
Sbjct: 44 AAGIHRLLLSCAAEASDGTISSLVAELESPSSSLDSLRRAA 84
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 RSISTDGLLW-GAAKLVPLAYGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 378
R + + +L+ G + +G+ ++ C +EDD + W+ E+ K + Y + VD+
Sbjct: 420 RDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVY 479
Query: 379 AF 384
+F
Sbjct: 480 SF 481
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 378
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 266 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDQKVDVY 325
Query: 379 AF 384
+F
Sbjct: 326 SF 327
>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
Length = 563
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 378
R I + +L+ V +A +GI + C V+ +D+ + W+ E+ K + Y + VD+
Sbjct: 393 RDIKPENILFDENFCVKIADFGIACEESMCDVLVEDEGTYRWMAPEMIKRKAYNRKVDVY 452
Query: 379 AF 384
+F
Sbjct: 453 SF 454
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 CLWLMVSISCKFPVL-LKMIRFLL 319
CL LMV + CK PV+ L+MI LL
Sbjct: 1561 CLGLMVLVQCKLPVITLQMIFDLL 1584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,433
Number of Sequences: 37544
Number of extensions: 168751
Number of successful extensions: 337
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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