Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G11
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   141   2e-34
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   139   1e-33
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    31   0.51 
Z78018-8|CAB01450.2|  405|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z78014-3|CAB01430.2|  405|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  141 bits (342), Expect = 2e-34
 Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
 Frame = +1

Query: 10  DDDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 189
           DDD DLFGS  E E              Y AKKA K   IAKS++ILDVKPWDDETD+  
Sbjct: 135 DDDFDLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGE 194

Query: 190 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQS 366
           +E+ VRSI  DGL+WG AKL+P+ YGI KLQI  V+ED KVS+D L E+I  + ED+VQS
Sbjct: 195 MEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQS 254

Query: 367 VDIAAF 384
           VDI AF
Sbjct: 255 VDIVAF 260


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  139 bits (337), Expect = 1e-33
 Identities = 72/125 (57%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
 Frame = +1

Query: 13  DDVDLFGSXXEXEXXXXXXXXXXXXXXYNAKKAKKPVLIAKSNIILDVKPWDDETDMAAL 192
           DD DLFGS  E E              Y  KKAKK   IAKS++ILDVKPWDDETD+  +
Sbjct: 86  DDFDLFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEM 145

Query: 193 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQSV 369
           E+ VRSI  DGL+WG AKL+P+ YGI KLQI  V+ED KVS+D L E+I  + ED+VQSV
Sbjct: 146 EKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSV 205

Query: 370 DIAAF 384
           DI AF
Sbjct: 206 DIVAF 210


>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 235 GAAKLVPLAYG-IHKLQISCVVE-DDKVSIDWLTEEIEKNEDY 357
           G  K  P A G I +  +SC+ E DD V  +WL E IE+ EDY
Sbjct: 288 GLKKYAPGALGPILETLLSCMTEMDDDVLNEWLNE-IEEEEDY 329


>Z78018-8|CAB01450.2|  405|Caenorhabditis elegans Hypothetical
           protein W07G4.6 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDW 324
           ++++RS+   G+L G   ++ L   I K+ +   +ED   SI W
Sbjct: 52  KESIRSVK--GILTGGVAVIILIISIIKIIVLMQIEDKSFSIGW 93


>Z78014-3|CAB01430.2|  405|Caenorhabditis elegans Hypothetical
           protein W07G4.6 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDW 324
           ++++RS+   G+L G   ++ L   I K+ +   +ED   SI W
Sbjct: 52  KESIRSVK--GILTGGVAVIILIISIIKIIVLMQIEDKSFSIGW 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,915
Number of Sequences: 27780
Number of extensions: 155855
Number of successful extensions: 340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)