Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G10
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 32 0.45
04_04_0789 - 28068819-28068989,28069081-28069477,28069857-280700... 30 2.4
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 29 4.2
05_06_0110 + 25632514-25632834,25633200-25634039 29 4.2
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789... 29 4.2
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 29 5.6
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 28 7.4
12_02_0534 - 20103908-20105897,20106314-20107116 28 7.4
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 28 7.4
01_06_0683 - 31173763-31174635,31175146-31175436 28 7.4
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 110 SALENSGNVFDLRRNHHLRDLNGPLIHAVSDNSTDIGSEARILQGWGQSEAPS 268
S L+N N + RN L+D NG L +SD ++ A GWG S
Sbjct: 108 STLQNESNYVTMERNE-LQDENGALRSEISDLQNELRMRATGSPGWGHGATGS 159
>04_04_0789 -
28068819-28068989,28069081-28069477,28069857-28070009,
28070698-28070834
Length = 285
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 307 HRKQWNYHH*PRTPHSCCLGYRRKIDLQKKKTLPQIR 417
HR+ N+ + R+ CCLG RR+ + ++++T P R
Sbjct: 115 HRRHLNHMNMARSNLLCCLGTRREDNARQRQTRPTPR 151
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 296 GTSCTENSGTITTSHVHRIAAVWDTE 373
GT CT+ +GT+TT+H+ + +W +E
Sbjct: 451 GTICTDKTGTLTTNHM-VVDKIWISE 475
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 297 APPAPKTVELSPLATYTA*LLFGIQKKNRSAKKKN 401
+PP+P + +SP + TA F +K +SAKKK+
Sbjct: 200 SPPSPASAVISPSESGTAAPAFPAKKAAKSAKKKD 234
>03_06_0662 +
35377974-35378270,35378354-35378623,35378795-35378973,
35380073-35380116,35380295-35380384,35380472-35380588,
35380679-35380803,35380883-35381155,35381253-35381386,
35381518-35381604,35381714-35381831
Length = 577
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 287 AGHGTSCTENSGTITTSHVHRIAAVWDTEE 376
+G SC E SGTI + + A +DTEE
Sbjct: 64 SGTAISCQEGSGTIFLTSASLVRAFYDTEE 93
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 367 IPNSSYAVYVASGDSSTVFGAGGAVACTNNGP*TWGFRLAPTLKNPRFAANISR 206
+P + ASG SS V GA G A T T+ L+ L++PR ++ R
Sbjct: 311 LPQNMVLENKASGSSSQVEGAEGDNAATEQAKPTYQRTLSGGLQSPRATIDVPR 364
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 462 FEYLYSFHFEKLSTSPNLR*CFFFLQIYFSS 370
FEYL S H ++L+ P+LR F LQ+ F S
Sbjct: 606 FEYLQSDHLDRLAELPSLR--FLRLQLAFVS 634
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 462 FEYLYSFHFEKLSTSPNLR*CFFFLQIYFSS 370
FEYL S H ++L+ P+LR F LQ+ F S
Sbjct: 798 FEYLQSDHLDRLAELPSLR--FLRLQLAFVS 826
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 242 GWGQSEAPSLRAIIGAGHGTSCTE 313
GW Q AP+ A +GAG G +E
Sbjct: 24 GWSQRRAPAAAAAVGAGAGAKKSE 47
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 297 APPAPKTVELSPLATYTA*LLFGIQKKNRSAKKKN 401
+PP+P ++ +SP + + F I+K ++ AKKK+
Sbjct: 198 SPPSPASMAISPAESGVSAHAFPIKKPSKPAKKKD 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,966
Number of Sequences: 37544
Number of extensions: 295737
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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