Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G10
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical
           protein F31D5.2 protein.
          Length = 470

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 45  SLRFFFYKHACLCYAYLICVIVQPWKTVEMFLTYXAITTFGISMVLSFTLSVIILLILAA 224
           ++ +FF+  ACL  A ++ +I   W  V  F TY A     + +  ++  +   LL + A
Sbjct: 56  AILYFFFTIACLLIAPVVDLITAKWSMVVGFFTYIAFQLGFLELNSAYLYTTSALLGIGA 115

Query: 225 KRGFFRVGASR 257
              F  VG  +
Sbjct: 116 --AFLWVGQGK 124


>U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical
           protein ZK813.3 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 337 ASGDSSTVFGAGGAVACTNNGP*TWGFRL 251
           A+ DS+  +G   A   +NN P T+G RL
Sbjct: 21  AAQDSNNAYGVNTAAQSSNNAPQTYGSRL 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,828
Number of Sequences: 27780
Number of extensions: 276916
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)