Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_G06
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 557 HVGLCRTPVPHGNPQGSVLRKSCCL 631
           H+G   TP P+G+P   ++  SC L
Sbjct: 121 HMG--HTPTPNGHPSTPIVYASCKL 143


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 527 WPKEIMGCTRHV 562
           WP +I+ CT H+
Sbjct: 166 WPYDILNCTIHI 177


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 67  TDDDRRLHSNKR*FTS 114
           TD DRRLH N   F S
Sbjct: 114 TDYDRRLHDNSPSFLS 129


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 322 ILKPKRTAFQELFNLETS*QICYNCNQNDTILFQNFGVFDHLTHQLLTLN 173
           IL+ KR   Q+++  +      Y  N N+   F+N  +F    H   T+N
Sbjct: 139 ILRKKREFMQKIWPFKE-----YQMNGNNITNFKNSNIFQLKQHMRDTMN 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,085
Number of Sequences: 438
Number of extensions: 4261
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)