Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_G01
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 317 6e-87
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 306 1e-83
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 41 0.001
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 40 0.002
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 5.6
07_03_0894 + 22362717-22363514 29 5.6
04_04_0147 - 23109072-23109372,23109638-23109752,23109885-231099... 29 5.6
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.6
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 5.6
11_06_0682 - 26253319-26253575,26254009-26254114 28 7.4
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 28 9.8
05_05_0256 - 23647736-23648947 28 9.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 317 bits (779), Expect = 6e-87
Identities = 156/208 (75%), Positives = 171/208 (82%), Gaps = 2/208 (0%)
Frame = +1
Query: 178 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 357
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 118
Query: 358 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 537
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 119 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 178
Query: 538 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICXQAGLVK--VPGKSVLD 711
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQIC QAGLVK GK
Sbjct: 179 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKSLEKGKHAEG 238
Query: 712 DHEDNFAIVFAAMGVNMETAXFFKQDFE 795
+DNFAIVFAAMGVNMETA FFK+DFE
Sbjct: 239 GEDDNFAIVFAAMGVNMETAQFFKRDFE 266
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 306 bits (752), Expect = 1e-83
Identities = 159/218 (72%), Positives = 174/218 (79%), Gaps = 12/218 (5%)
Frame = +1
Query: 178 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 357
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 78
Query: 358 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQ---------G 510
ID K T +FTG++L+TPVS DMLGRVFNGSGKPID GPPIL E +LDI G
Sbjct: 79 IDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAG 138
Query: 511 QPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICXQAGLVKV 690
INP R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQIC QAGLVK
Sbjct: 139 SSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 198
Query: 691 PGKS--VLDDHED-NFAIVFAAMGVNMETAXFFKQDFE 795
KS +L+ ED NFAIVFAAMGVNMETA FFK+DFE
Sbjct: 199 LEKSDNILESSEDENFAIVFAAMGVNMETAQFFKRDFE 236
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +1
Query: 193 VSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKN 372
V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+ +
Sbjct: 60 VLAVSGPVVVADGMGGAAMYELVRVG-NDNLI--GEIIRLEGDSATIQVYEETAGLMVND 116
Query: 373 TLCEFTGDILRTPVSEDMLGRVFNGSGKPI 462
+ T L + +LG +F+G +P+
Sbjct: 117 PVLR-TRKPLSVELGPGILGNIFDGIQRPL 145
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +1
Query: 166 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 345
S+ Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E
Sbjct: 13 SEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYE 69
Query: 346 GTSGIDAKNTLCEFTGDILRTPVSEDM----LGRVFNGSGKPI 462
T+G+ + + + P+S ++ LG +F+G +P+
Sbjct: 70 ETAGLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPL 112
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 153 WRLPGHVPWSPGRERSPLPFF 91
WR+ GH+P G R P+ FF
Sbjct: 252 WRVQGHLPQRQGPRRVPIDFF 272
>07_03_0894 + 22362717-22363514
Length = 265
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 491 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDV 348
SSA L+ GLP + R +++ E GVR + ++S F A P +
Sbjct: 56 SSAAKADALAAGLPRAVAVRADVADEAGVRSLFDA-AESAFGAGAPHI 102
>04_04_0147 -
23109072-23109372,23109638-23109752,23109885-23109970,
23111398-23111654
Length = 252
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 538 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICXQAGLVKVPGKSV 705
+PE +G DV+ ++ G +P AAGL + + AGL +V ++
Sbjct: 25 HPERHFTSGEVVRDVIMGVSDGLTVPFALAAGLSGASAPSSLVLTAGLAEVAAGAI 80
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 263 CTISENLGNLTSSKMTRGPFTPDTVL*VSLG 171
C ++E++ L S +T P TPDTVL VS G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 205 NGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 339
NGP+ + + KF ++ + KLAD T G + G +V V
Sbjct: 321 NGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGDSVAAV 365
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 674 PVLSRSPASQSWTTTRTTSPLCSPLWVSTWKRPXSSSRT 790
P +P+S S TTT TT+P S +W S + P S+ T
Sbjct: 56 PTTPVTPSSSSPTTTATTTPRGSNVWRSVF-HPGSNLAT 93
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 452 PEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSS 303
P P P S TG P S PD+P TWTT L+ +T++
Sbjct: 202 PPPPPPPPPPSDATGGEVSIPCFPFSPLPFIEPDLPELTWTTDLDDITAT 251
>05_05_0256 - 23647736-23648947
Length = 403
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 674 PVLSRSPASQSWTTTRTTS 730
P L +PAS SWTTT +T+
Sbjct: 330 PGLGSAPASTSWTTTESTT 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,992,586
Number of Sequences: 37544
Number of extensions: 605533
Number of successful extensions: 1799
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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