Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F24
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   9.2  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 145 FPXQGPRREPEAAAGLRRPGVRRQSHFI*KLARIQT*DSVRS 270
           FP  GP   P  ++ L+R G+     +   L   QT + +RS
Sbjct: 750 FPGHGPTTAPMGSSILKRLGIDESVDYTKPLVDAQTMNLLRS 791


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 592 CVHKVAPGQLAKRDMTVVLRQYLIEFLE 509
           C H VAPG   ++ + +  ++  I ++E
Sbjct: 616 CYHAVAPGTDIRQSIALSRKKKCIRYME 643


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 592 CVHKVAPGQLAKRDMTVVLRQYLIEFLE 509
           C H VAPG   ++ + +  ++  I ++E
Sbjct: 508 CYHAVAPGTDIRQSIALSRKKKCIRYME 535


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 550 YRAWQVDLGR 579
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 239 PEFKPKTPFGQMPVLEIDGK 298
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 285 KSTASSTLRALPSAGTSAASTDSPGP 362
           +ST SS+  ++PS  T+   + +P P
Sbjct: 122 ESTVSSSTSSIPSPSTTDDLSTNPTP 147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,151
Number of Sequences: 336
Number of extensions: 3064
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)