Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F24
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 38 0.002
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 29 0.82
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 29 0.82
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 29 1.1
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 28 1.9
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 2.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.8
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 5.8
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa... 26 5.8
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.8
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 215 NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 373
+R+ P + +P G+ P++ DG Y +S AI +L RKYG + EE
Sbjct: 32 DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 29.1 bits (62), Expect = 0.82
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 392 NVEFLNDIRA-SAASVHYEKDEAVKAKK--RAELEETKYPFFFEKL------NEILTKNN 544
N E L DI + + ++ + DE +AK R E +P F L +I+TKN
Sbjct: 249 NSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWLSTQIITKNR 308
Query: 545 GHIALGKLTWGDFVYAGMYDYLKAMLQKPDL 637
I L W D++Y+ D+ +QKP L
Sbjct: 309 TSIRL----WIDYLYSTAVDFYTNWIQKPIL 335
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 29.1 bits (62), Expect = 0.82
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +2
Query: 248 KPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEEAFEIDQNVEFLNDIRASA 427
KP+ PF V+E Y + Y N+ +A+E Q + ++D+ A A
Sbjct: 78 KPQWPFTGYSVVENLPSIYEGDVSPEELRWWAYQAKATNNMQAYEQRQK-QLMDDVEAKA 136
Query: 428 ASVHYEKDEAVKAKKRAELEETKYPFFFEK--LNEILTKN 541
A+V A + + +T Y F+K N +T N
Sbjct: 137 AAVKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSN 176
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 388 VDLEGLLVIGPGESVLAAEVPADGSA 311
VD++GL PG+ + PADGSA
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 329 YLGRKYGLAGANDEEAFE--IDQNVEFLNDIRASAASVHYEKDEAVKA-KKRAELEETKY 499
YL +G+ AN + +D ++ F + SVH DEA++ KK ++ +
Sbjct: 25 YLTDNFGMGNANRVNLNQQVLDGSISFRDAFAKMLDSVHLSYDEALEVLKKNVAIDPSFK 84
Query: 500 PFF 508
PF+
Sbjct: 85 PFY 87
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 559 KRDMTVVLRQYLIEFLEKERVFSLLQFRPLLSFDGLVFLVVDRCGT 422
+R + + LRQY I E +++ L F F + + + C T
Sbjct: 416 ERALPIELRQYFIALTENAQIYEELDFEKQRLFSACIEVYLSYCNT 461
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 122 CRTLSSTISPXKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQ 301
C + + +SP + + + L+ Y + E +S ++ + P G +P L +DG
Sbjct: 653 CFSKEAIVSPFISGTKIKNLVYPYDEYQLE----ASSHFSQISNTEPMGCLPELGLDGYG 708
Query: 302 YAQSTAICRYLGRK 343
Y I Y+ R+
Sbjct: 709 YKLFVPINEYIPRR 722
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 359 ANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFE 514
AND+E I + +E ++ A AA +KD + E+ K F+ E
Sbjct: 333 ANDDERMVISETLEEEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVE 384
>SPCC18B5.06 |erf1|sup45|translation release factor
eRF1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 581 FVYAGMYDYLKAMLQKPDLEQ 643
FV G+YDY+ +M K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 11 SMGICVGLYFSFYFHFSFQRGATCY*TIIHYCTITRQCRTLSSTIS 148
S IC F +F SFQ A CY ++ Y T +L STI+
Sbjct: 92 SFYICYFSIFLLFFAISFQ--AECYYSLTAYATSAFAGHSLLSTIA 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,414
Number of Sequences: 5004
Number of extensions: 51836
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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