Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F22
         (711 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2; Rhodob...    35   2.3  
UniRef50_Q54XS8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  

>UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2;
           Rhodobacteraceae|Rep: ComEC/Rec2-related protein -
           Jannaschia sp. (strain CCS1)
          Length = 706

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 425 PGGLFSFTRTGGRAKA*PGGVGFANSCPSASEGDLTTQE 309
           PGGL   T   GRA + P G GF       ++GDL TQE
Sbjct: 540 PGGLVGLTTDQGRALSRPRGDGFVAGIWLENDGDLITQE 578


>UniRef50_Q54XS8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1350

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 14  HGSSNSNFNHINTYLKPNNCSSSNGPLGYQR 106
           + +SNSN N  N+    NNC++SNG + YQ+
Sbjct: 252 NNNSNSNSNSNNSGNNNNNCNNSNGNIQYQQ 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,884,216
Number of Sequences: 1657284
Number of extensions: 9488659
Number of successful extensions: 24143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24135
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)