Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F22
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   6.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   6.1  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.1  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 391 PPVLVKLKRPPGHQ*SFNHKKVLLATKANEK*FASFYNSRHKFLKSTHHVDDT 549
           PPVLVK+      +   +   VL   K +     +    R K LKST HV++T
Sbjct: 301 PPVLVKIAPDLNEEELTDIADVLKKCKIDGVIVGNTTVQRPKTLKSTSHVEET 353


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 629 CTVFVGTDDCRR 664
           CT+++G +DCRR
Sbjct: 424 CTIYMGAEDCRR 435


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 434 NPSIIKKS-FWQRKQTKNNLRVFITVDTN 517
           NP    KS FW RK+ KN++ +  + D+N
Sbjct: 50  NPCNFSKSLFWLRKKIKNSVLLKTSFDSN 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,956
Number of Sequences: 5004
Number of extensions: 38974
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)