Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F20
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 111 7e-25
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 100 3e-21
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 44 2e-04
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 40 0.003
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 33 0.23
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 33 0.39
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 4.9
02_02_0737 - 13529180-13529543,13530661-13531178 28 8.5
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 8.5
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 111 bits (267), Expect = 7e-25
Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 14/252 (5%)
Frame = +3
Query: 120 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 299
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 300 KGHAAPILYAAWAEAGLFPL--DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAV 470
GH + YA AG + ++LK R+ S GHP V+V TG LGQG+A
Sbjct: 144 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIAN 203
Query: 471 AAGMAYVGKYF---------DQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLDNLVVIF 623
A G+A K+ + + YC++GDG EG E+ A H+ L L+ +
Sbjct: 204 AVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWGLGKLIAFY 263
Query: 624 DVNRLGQSEPTSLQHQLEVYDARLKAFGLNSL-VVDGHD-VTELVKAFDEAASVTGKPTA 797
D N + T + +V AR +A G +++ V +G+D E+ A EA +VT KPT
Sbjct: 264 DDNHISIDGDTEIAFTEDV-SARFEALGWHTIWVKNGNDGYDEIRAAIKEAKAVTDKPTL 322
Query: 798 LVAXTYKGRGFP 833
+ T G G P
Sbjct: 323 IKVTTTIGFGSP 334
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 99.5 bits (237), Expect = 3e-21
Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Frame = +3
Query: 114 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 293
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 294 LSKGHAAPILYAAWAEAGL--FPLDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGL 464
LS GH + YA AG +D+LK R+ S GHP V+V TG LGQG
Sbjct: 113 LSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGF 172
Query: 465 AVAAGMAYVGKY----FDQAPYRV-----YCLVGDGEAAEGSIWESLHFASHYKLDNLVV 617
A A G+A K+ F++ ++ Y ++GDG EG E+ A H+ L L+
Sbjct: 173 ANAVGLALAEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGHWGLGKLIA 232
Query: 618 IFDVNRLGQSEPTSLQHQLEVYDARLKAFGLNSL-VVDGH-DVTELVKAFDEAASVTGKP 791
+D N + T + + AR +A G +++ V +G+ ++ A EA +V KP
Sbjct: 233 FYDDNHISIDGSTGIAFTEDAL-ARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVKDKP 291
Query: 792 TALVAXTYKGRGFP 833
T + T G G P
Sbjct: 292 TLIKVTTTIGYGSP 305
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 43.6 bits (98), Expect = 2e-04
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Frame = +3
Query: 438 GTGSLGQGLAVAAGMAYVGKYFDQAPYR--------VYCLVGDGEAAEGSIWESLHFASH 593
G +G+G+ VA G A+ KY + + GDG G +E L+ A
Sbjct: 182 GFAFIGEGIPVATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQL 241
Query: 594 YKLDNLVVI-FDVNRLGQSEPTSLQHQLEVYDARLKAFGLNSLVVDGHD---VTELVKAF 761
+KL + V+ ++ +G S + E+Y + AFG+ + VDG D V E+ K
Sbjct: 242 WKLPIVFVVENNLWAIGMSHLRATSDP-EIY-KKGPAFGMPGVHVDGMDVLKVREVAKEA 299
Query: 762 DEAASVTGKPTALVAXTYKGRG 827
E A PT + TY+ RG
Sbjct: 300 IERARRGEGPTLVECETYRFRG 321
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 39.9 bits (89), Expect = 0.003
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Frame = +3
Query: 417 RLNFVDVGTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHY 596
RLN+ V + Q L A G AY K D+ GDG +EG +L+FA+
Sbjct: 267 RLNYFTVSSPIATQ-LPHAVGAAYSLK-MDKKDACAITYFGDGGTSEGDFHAALNFAA-- 322
Query: 597 KLDNLVVIFDVNR-LGQSEPTSLQHQLEVYD-------------ARLKAFGLNSLVVDGH 734
++ V+ F N S PTS Q + ++Y+ R +A+G+ S+ VDG+
Sbjct: 323 VMEAPVIFFCRNNGWAISTPTSEQFRSDLYNNLNSTAIAGDGAVIRGQAYGMRSIRVDGN 382
Query: 735 D---VTELVKAFDEAASVTGKPTALVAXTYK 818
D V V E A G+P + A TY+
Sbjct: 383 DALAVYSAVHTAREMAIKEGRPILVEALTYR 413
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 33.5 bits (73), Expect = 0.23
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 11/187 (5%)
Frame = +3
Query: 99 KNVDFEQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLF--FHTMRYKI--SAP 266
KN+ ++L+ +A++LR D I + + GH S + E+ L F+T + KI
Sbjct: 83 KNLSLKELQQLADELRSDVIFHVSKT-GGHLGSSLGVVELTVALHYVFNTPQDKILWDVG 141
Query: 267 RDASADRFILSKGHAAPILYAAWAEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTG 446
+ + + + P + +G E + DS GH + ++
Sbjct: 142 HQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSE----SEYDSFGTGHSSTTISAALGNLL 197
Query: 447 SLGQGLAVA-------AGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLD 605
Q L + AGMA VG+ V ++GDG G +E+++ A + D
Sbjct: 198 FFLQSLCIELPAYVRLAGMA-VGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD 256
Query: 606 NLVVIFD 626
+V++ D
Sbjct: 257 MIVILND 263
Score = 32.3 bits (70), Expect = 0.52
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 723 VDGHDVTELVKAFDEAASV-TGKPTALVAXTYKGRGFPGIE 842
VDGH++ +L+ E S T P + T KGRG+P E
Sbjct: 493 VDGHNIDDLITILREVKSTKTTGPVLIHVVTEKGRGYPYAE 533
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 723 VDGHDVTELVKAFDEAASVTGKPTALV-AXTYKGRGFPGIE 842
VDGH V +LV F++ S+ LV T KG+G+P E
Sbjct: 324 VDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGKGYPPAE 364
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 403 ATPPRDSTSWTSAPAPW 453
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 622 KMTTRLSSL*WLAKCSDSQMLPSAASPSPTRQYT 521
+ T R SS WLA+ +D A++PSP +Y+
Sbjct: 217 RRTLRASSFTWLARFADFATGSGASTPSPPGRYS 250
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 189 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 344
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,615,589
Number of Sequences: 37544
Number of extensions: 474782
Number of successful extensions: 1681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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