Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F14
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946           34   0.088
08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714           30   1.4  
03_05_0092 - 20714102-20717902                                         27   7.7  
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    27   7.7  

>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
          Length = 447

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 145 LKQTKRNAGHGVWTYRVPPPMPSKKSIRLAQ 237
           L    R AGH VW    PPP P ++ ++LAQ
Sbjct: 118 LPHLPRGAGHEVWPPHHPPPPPQQQQLQLAQ 148


>08_01_0641 - 5557036-5557163,5557227-5557348,5557410-5557714
          Length = 184

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 220 SIRLAQGLGGLCWWWILYHIATEPEH--ITGEWPYIDPSTWTDEELGIPPDSAG 375
           S+ L  G G L WWW    +A+  +   + G    + P+T   E L  PP S+G
Sbjct: 32  SLSLCAGCG-LGWWWCFVPLASVRDDGVVAGVGDVVVPATELAEALLRPPPSSG 84


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 159 TKCRTWSLDVPCTATNA 209
           TKC +W L  PC+ +NA
Sbjct: 836 TKCPSWMLKTPCSLSNA 852


>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 247 HQALELTESIFWKALVAVHGTSKLH 173
           H   EL   +FW+ +VAV  T  +H
Sbjct: 191 HDVAELGVDLFWRIMVAVKATGAVH 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,496
Number of Sequences: 37544
Number of extensions: 305629
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)