Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F14
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.7  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 14  WESVLPLQNLSRKPT 58
           WE V  LQNL +K T
Sbjct: 232 WEEVYILQNLQKKRT 246


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 271 YHIATEPEHITGEWPYID 324
           YH+A  P H++   P +D
Sbjct: 5   YHVAQLPHHLSPNMPTMD 22


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 129 WRRWLLETNQTKCRTWSLD 185
           +R+W  +T    C T+ LD
Sbjct: 654 FRKWAADTFAVACETFCLD 672


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 218 FLEGIGGGTRYVQTPCPAF 162
           F E I  G+ Y+QT  PA+
Sbjct: 322 FEEDINEGSNYMQTRVPAW 340


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 150 TNQTKCRTWSLDVPCTAT 203
           T  T C+ W++D  C  T
Sbjct: 181 TAATDCQLWAIDRQCFQT 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,996
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)