Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F13
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    27   2.1  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   4.9  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   4.9  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   4.9  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   4.9  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   6.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   8.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 242 VQLTSVNEQERNELKEMIGNYVDKMKWENLT-LRMQ 346
           V+L+S+N+++  EL+  +     K+ WEN++ +RM+
Sbjct: 219 VELSSLNDKKFKELRRQLPVTRQKINWENVSGIRMR 254


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 368 VCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRKFSL 207
           V   D VFA  +L    +  R+NS +     FFP      +  I SP+ R FSL
Sbjct: 621 VFRQDSVFAARKLIEKKNIERKNSETLSNSSFFPQALKAHMNSISSPK-RHFSL 673


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 419 KNRRPQDVP-DNSLWLHYVCHSDKVFAFSELSSPISFCRRNSRSFL 285
           K R  Q  P  N LWLHY+ H  ++     LSSP++      RS L
Sbjct: 403 KGRWAQFFPITNVLWLHYLIH--QLLHKKNLSSPLTETETLMRSRL 446


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ATSSTKPRLLAHGTRNNTNQRKLTHSGT 233
           A  ST PR     +  NTN + + H+GT
Sbjct: 26  ARRSTSPRTSTGSSSTNTNTKTVDHAGT 53


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = +2

Query: 209 KKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLRMQIPCPSDKHNVTKDY 388
           K+T A  D+  V+L+  N      L +   NY DK+  +   +  +   PS +       
Sbjct: 207 KETLAALDN--VKLSDENAAHLGYLVKYFQNYTDKIILKETLMDWEDKEPSLQELTESTK 264

Query: 389 YLERLEGDGFYRTLNMP 439
           YLE L  D  +RT N P
Sbjct: 265 YLENL-ADTDHRTSNKP 280


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 344 QIPCPSDKHNVTKDYYLERLEGDGFYRTLNMPPPTA--KLEFGVFRRYPI 487
           QIP P    NV      + +   GF   + +PPP    + + G  R +P+
Sbjct: 176 QIPGPLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGGPQEDMGYSRNFPV 225


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 526  HYTKVLILDDLQTYWVTTKDAEFQFSS 446
            H  K L+ D  + +WV T DA+ +  S
Sbjct: 1915 HLLKFLLEDSKKRFWVKTSDADREHGS 1941


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 431 LESCKNRRPQDVPDNSLWLHYVC-HSDKVFAFSELSSPISF 312
           LE    ++P    D+S     VC H+D   AF++LSSP  +
Sbjct: 284 LEPTSPQKPSFALDSSFSHLDVCRHTDNQKAFAKLSSPAEY 324


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 230 DSECVQLTSVNEQERNELKEMIGNYVDKM 316
           DS+C+   ++  Q RN  + +IG Y  K+
Sbjct: 123 DSDCIDYRAMFYQSRNNPEVVIGGYHQKL 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,724
Number of Sequences: 5004
Number of extensions: 64435
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)