Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F13
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 36 0.026
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 34 0.10
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 34 0.10
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 33 0.31
03_02_0344 - 7654551-7656149 30 1.7
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 29 5.1
12_01_1029 + 10547341-10548108 28 9.0
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 VGVINASPKVNDVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 250
V V P H +Q+N + Q HV +E + T H HK+K+T+ D + +++
Sbjct: 490 VKVYGDGPLQEICHVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 549
Query: 251 TSVNEQERNELKEMIGNYVD 310
+Q+ N++ + N ++
Sbjct: 550 ICAKKQQCNKMDFITDNSME 569
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 VGVINASPKVNDVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 250
V V P H +Q+N + Q HV +E + T H HK+K+T+ D + +++
Sbjct: 577 VKVYGDGPLQEICHVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 636
Query: 251 TSVNEQERNELKEMIGNYVD 310
+Q+ +++ + N ++
Sbjct: 637 ICAKKQQCSKMDFITDNSME 656
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 VGVINASPKVNDVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 250
V V P H +Q+N + Q H +E + T H HK+K+T+ D + +++
Sbjct: 575 VKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 634
Query: 251 TSVNEQERNELKEMIGNYVD 310
EQ+ +++ + N ++
Sbjct: 635 ICAKEQQCSKMDFITDNSME 654
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 VGVINASPKVNDVHXKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQL 250
V V P H +Q+N + Q H +E + T H HK+K+T+ D + +++
Sbjct: 578 VKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEI 637
Query: 251 TSVNEQERNELKEMIGNYVD 310
+Q+ +++ + N ++
Sbjct: 638 ICAKKQQCSKMDFITDNSME 657
>03_02_0344 - 7654551-7656149
Length = 532
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 196 LRVPCANNLGFVEDVALRRIFTVLLLXVYIVDFRR 92
L +P L F++ + +RR+F V + YI DFRR
Sbjct: 381 LVLPLTEQLKFLKSLMMRRVFRVKGVRPYIPDFRR 415
>08_02_1416 - 26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 55 LIVLLGSGSXKRVSESQRCTRQAAKL*KFSARPRLQRSPGYWHMAPATTQIKENLRIRGL 234
L+V LGSG+ ++C + PRL R P M+P N+ + L
Sbjct: 862 LLVELGSGTSPNKKNEEKCAADGP----YPESPRLSRFPNLPDMSPKKVSAAHNVYVSPL 917
Query: 235 R 237
R
Sbjct: 918 R 918
>12_01_1029 + 10547341-10548108
Length = 255
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 46 RCXLIVLLGSGSXKRVSESQRCTRQAAKL*KFSARPRLQRSPGYWHMAPATTQIKENLRI 225
RC V G+ R + ++R R AA F A+PR R G H A T + R
Sbjct: 52 RCGRPVHGRGGTGGRTTPARRMERFAAMCGGFRAKPRGGRGGGLRHRAEGGTAAPADARA 111
Query: 226 R 228
R
Sbjct: 112 R 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,941,710
Number of Sequences: 37544
Number of extensions: 396833
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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