Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F13
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    35   0.070
U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    29   3.5  
U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   8.0  
U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 235 RMCSINFGQRTGKKRIKRNDRELRRQNEMGELNSENANT 351
           R+ SI+FG   GKK +KR   + + + EM E+N +N NT
Sbjct: 594 RILSIDFG---GKKSLKRKMEDEQMEKEMAEMNDQNDNT 629


>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 158 FNEAQVIGTWHP-QQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 334
           F E  ++   +P  Q +  +   F  S+C    S +    + +K+ + N++D  KWEN+ 
Sbjct: 23  FEETYLLKRVNPFAQTEEGRIIKFNSSDCPCGKSQDVHNISAMKDQLSNFLD--KWENVH 80

Query: 335 LRMQIPCPSDKHNVTK 382
            +  +P  S +   +K
Sbjct: 81  EKFSLPTGSSELTTSK 96


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
 Frame = +2

Query: 212 KTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKW---ENLTLRMQIPCPS---DKHN 373
           +TY + D E  +L   N +E  E    IG  +D++ +   +++ + M   C S   D+  
Sbjct: 137 QTYNYSDPEVQELVLNNYEEAQE--NAIG--IDQLLFLDHQSVMIVMPAACNSSNSDEKE 192

Query: 374 VTKDYYLERLEGDGFYRTLNMPPPTAKLEFGVFRRYPIRLKIIENEYLGI 523
           ++K YYLE+  GD  +   N+     KL   V    P  L  I N+ LG+
Sbjct: 193 ISKQYYLEKY-GDFSFNVSNLNIELDKLHEMVHDFKP--LDQIMNQNLGL 239


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 167 AQVIGTWHPQQHK-SKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLRM 343
           A +IG+W P QHK S K+   G    V   S   Q  NE ++M+      MK+  +   +
Sbjct: 317 ATIIGSWLPTQHKNSPKSEISGVGSVVTQMS---QTVNEFRQMMDGIKFYMKYREVNSAI 373

Query: 344 Q 346
           Q
Sbjct: 374 Q 374


>U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical
           protein R106.1 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -1

Query: 207 DLCCCGCHVPITWASLKTWPCGE-FSQFCCLXCT 109
           D CCCG H P   A L        F  F CL C+
Sbjct: 53  DQCCCGDHAPSLSAMLPVLISRHIFYTFLCLLCS 86


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 320 WENLTLRMQIPCPSDKHNVTK 382
           WE L LR  +P P+D++ +TK
Sbjct: 123 WEQLLLRKLLPSPADRNMLTK 143


>U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical
           protein ZC487.1b protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 320 WENLTLRMQI-PCPSDKHNVTKDYYL 394
           WE +TL  Q+ P P D  N+ K+Y+L
Sbjct: 278 WEVMTLTAQLGPQPEDVDNIDKNYHL 303


>U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical
           protein ZC487.1a protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 320 WENLTLRMQI-PCPSDKHNVTKDYYL 394
           WE +TL  Q+ P P D  N+ K+Y+L
Sbjct: 280 WEVMTLTAQLGPQPEDVDNIDKNYHL 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,628
Number of Sequences: 27780
Number of extensions: 367162
Number of successful extensions: 1045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)