Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F13
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 377 LHYVCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRKFSLICV 198
           + YV   ++V+    L    +       S  + +  PVR   L  ++ S  MR F+LIC+
Sbjct: 226 VRYVSQWEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRIFNLICM 285

Query: 197 V 195
           +
Sbjct: 286 M 286


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 654 LTTIIIFISYMSSGQYICVILFRRSSTFVPSD 559
           LT ++IF++        C++++R  S   P++
Sbjct: 38  LTYVVIFVTGFVGNIITCIVIWRNPSMQTPTN 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 641 LFLFLICRLANIFALFCL 588
           LF+ ++C ++ +  LFC+
Sbjct: 417 LFIAIVCFVSYLIGLFCI 434


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 641 LFLFLICRLANIFALFCL 588
           LF+ ++C ++ +  LFC+
Sbjct: 470 LFIAIVCFVSYLIGLFCI 487


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 23  MSTCRHSVDVF*SYY*AVGVINAS-PKVNDVHXKQ 124
           +S  RH  D++   Y  VGV+ AS P   D + ++
Sbjct: 770 LSRARHHDDLYSQSYAEVGVLFASMPNFADFYSEE 804


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,240
Number of Sequences: 438
Number of extensions: 4967
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)