Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F12
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 35 0.018
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 31 0.30
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 3.7
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 3.7
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 3.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 8.5
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 8.5
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 8.5
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 34.7 bits (76), Expect = 0.018
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +2
Query: 275 VIKKILETGGGMPL-HDGCTVSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDI 451
V K+++ +G G G +++ ++G N + + +P + L+ G D
Sbjct: 3 VEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDE 62
Query: 452 AVRSMLVGEISLFLFSYKVMYGEMGIPPRIKPKSDCVFYIKLV 580
V M +GE + + YG G P I P S +F ++L+
Sbjct: 63 GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 332 VSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDIAVRSMLVGEISLFLFSYKVM 511
VS+ + G N + FD P T +L ++ G D+ + M VG +
Sbjct: 279 VSMRYIGRLTNG-KVFDKNITGKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337
Query: 512 YGEMGIPPRIKPKSDCVFYIKLV 580
YG + P I SD VF +KL+
Sbjct: 338 YGSKRL-PGIPANSDLVFDVKLL 359
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 3.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 513 YITLYENKN-SDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAI 337
+ TL +N +D S+D A + + + T L +TS S++ EN+I
Sbjct: 82 FATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSL---LLSKFKENSI 138
Query: 336 ETVHPSCKGIPPP 298
ET+ P K PP
Sbjct: 139 ETISPFLKSTVPP 151
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 566 YIKLVKSMLTPK--EGALNLNEPNTFQR 643
YI V +++PK A N+N+PN F+R
Sbjct: 456 YISYVTPIMSPKLWSEARNMNDPNAFER 483
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 86 NGLDLRECTTTGSILHINEIYEENDDNDTTESKVF 190
+GLDL TT N IY+E+D N T +S F
Sbjct: 264 DGLDLNTVFTTND-WEKNIIYDESDVNKTNQSSFF 297
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 552 DFGFILGGIPISPYITLYENKNSDISPTSIDLTAI 448
DFG + G + +S I +E KNS++ P +TA+
Sbjct: 176 DFGRVNGNLALSRAIGDFEFKNSNLEPEKQIVTAL 210
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 143 IYEENDD-NDTTESKVFKTIDILGEPVKNFEVLKNELIPVDENH 271
IYE DD DT S F + L + KNE++P+ +H
Sbjct: 230 IYEIGDDLEDTFRSFSFLELHSLAIKLSKLVTCKNEVVPIMVSH 273
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 501 YENKNSDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSF-SQYPENAIETVH 325
YE + D+ + LT +KP R + K T++ +SF S+ E A E
Sbjct: 256 YERRRGDVKDRAEALTITKFKTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSS 315
Query: 324 PSCKGIPPP 298
+ IPPP
Sbjct: 316 STATDIPPP 324
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 701 NFSLAIHLFNKAVRILHKCRLADEED 778
NFS++I L NKA++ L K ++A D
Sbjct: 251 NFSVSISLRNKAIQHLLKSKIAANTD 276
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +2
Query: 230 EVLKNELIPVDENHYVIKKILETGGGMPLHDGCTVSIAFSGYWENEL 370
E L N P H +++++ E +P D C V++ W++ +
Sbjct: 451 ENLDNLYDPDSHVHLILQELGEPCKSVPQEDNCLVTLPLYNRWDSSI 497
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 617 LNEPNTFQRVHHEVKLLYSSGYSLYKIKNFSLAIHL 724
LNEPN F H++ + Y++ + NF+ I L
Sbjct: 336 LNEPNFFVLDEHKITDWHKQAYAVIRQSNFTGLISL 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,324
Number of Sequences: 5004
Number of extensions: 73033
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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