Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F11
         (873 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    47   2e-07
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   5.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   5.5  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +2

Query: 116 TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIAS------GDNIWISGTSVSRLTIRRVT 277
           T+  G  + L C   G P PE + W   G R+++      G  + ++G  VS L I  + 
Sbjct: 424 TVQPGNSVFLKCIASGNPTPE-ITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIH 482

Query: 278 VGDSGVYVCHADNLYSSHESSVQVTVKALTTPAKCTDNPFFADCSLIVRSKFCKH 442
             D G+Y C A +   S + S ++ V  L            A  +LIV   F  H
Sbjct: 483 TNDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFAGH 537



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +2

Query: 128 GAELSLPCEVDGYPQPENVYWSKDGVRIASGDNIWISGTSV----SRLTIRRVTVGDSGV 295
           G++ ++ C+ DG+P+P   +    GV      +   +   +      LTI  +   + G 
Sbjct: 713 GSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGY 772

Query: 296 YVCHADNLYSSHESSV-QVTVKA 361
           Y+C A N   S  S+V Q++V+A
Sbjct: 773 YLCEAVNGIGSGLSAVIQISVQA 795



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 116 TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDNIWISGTS--VSRLTIRRVTVGDS 289
           ++  G  +S+ C V     P N+ W+ +G  I   + I I+  S  VS L+I  V     
Sbjct: 614 SINEGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRVSTLSIDNVQSTHV 673

Query: 290 GVYVCHADN 316
           G Y C A N
Sbjct: 674 GNYTCLASN 682



 Score = 30.7 bits (66), Expect = 0.016
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = +2

Query: 137 LSLPCEVDGYPQPENVYWSK--DGVR----IASGDNI-WISGTSVSRLTIRRVTVGDSGV 295
           ++L C   G+P P +  W K  +G      +   D +  ++GT    L IR   V DSG 
Sbjct: 250 VALLCPAQGFPSP-SFRWYKFVEGTTRKQAVTLNDRVKQVAGT----LIIREAKVEDSGK 304

Query: 296 YVCHADNLYSSHESSVQVTVKALTTPAKCTDNP 394
           Y+C  +N  S    SV+ TV  +T P K    P
Sbjct: 305 YLCVVNN--SVGGESVE-TVLTVTAPLKAKIEP 334



 Score = 30.3 bits (65), Expect = 0.021
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = +2

Query: 80  APVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDNIWISGTSVSRL 259
           AP+  +I     T+  G   +  C  +G P  + + W KDG  I   + +         L
Sbjct: 326 APLKAKIEPQVQTIDFGRPATFTCNFEGNPI-KTISWLKDGHPIDHNEAV---------L 375

Query: 260 TIRRVTVGDSGVYVCHADNLYSSHESSVQV 349
            I  V   D G+Y C   N   S E++ ++
Sbjct: 376 RIESVRKEDKGMYQCFIRNDQESAEATAEL 405


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 434 CKHHYYSNFCCKSC 475
           CK  Y    CCK+C
Sbjct: 788 CKRIYNEKQCCKNC 801


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 195 LDQYTFSGCGYP 160
           L Q+ F GCG+P
Sbjct: 572 LAQFNFCGCGWP 583


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 198 SLDQYTFSGCGYP 160
           +L ++ F GCG+P
Sbjct: 570 ALSEFNFCGCGWP 582


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 561 NSPKNYFLLVKAASFC 514
           N  ++YF L KA SFC
Sbjct: 29  NHRESYFRLSKAKSFC 44


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 311 RRGTRTLRYLRPSLGVSSDGKH*FHLSICCL 219
           +R  R+  YL  +L  ++  +  + L++CCL
Sbjct: 33  KRMMRSWYYLLTNLTYNNTNRKYYWLNVCCL 63


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 735 MYNSFKITQFMALNNKIVPSK*SHRS 658
           MY++F I Q +ALN +   +  ++RS
Sbjct: 487 MYDAFLIDQSLALNRRRDENPRNYRS 512


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 735 MYNSFKITQFMALNNKIVPSK*SHRS 658
           MY++F I Q +ALN +   +  ++RS
Sbjct: 487 MYDAFLIDQSLALNRRRDENPRNYRS 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,630
Number of Sequences: 336
Number of extensions: 3924
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)