Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F11
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0252 - 19386942-19387048,19388332-19388947 32 0.52
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 31 1.6
09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091 29 3.7
03_05_0029 + 19992040-19992211,19992657-19992856 29 3.7
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 29 4.9
09_04_0109 - 14674980-14675004,14675861-14676468 29 6.4
06_01_0326 + 2372176-2373057,2373146-2373610 29 6.4
07_03_0141 + 14249788-14249992,14250240-14250295 28 8.5
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 28 8.5
01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666... 28 8.5
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 159 STSQGRLSSAPAVSVGGADNILVDTGACPLAQASSS 52
+ + G+LSS+ +GG N++ D G CPLA+ +SS
Sbjct: 201 AVADGQLSSSFCPGLGGVKNVIRD-GRCPLARVTSS 235
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 80 APVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDN 226
+P T S PP A L +P + YP +N+ +G ++SG N
Sbjct: 1399 SPAETSFSSPPPATQFSAPLMVPT-IQRYPSMDNITTPNNGSGLSSGSN 1446
>09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091
Length = 241
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 134 ELSLPCEVDGYPQPE-NVYWSKDGVRIASGDNIWISGTSVSR---LTIRRVTVGDSGVY 298
+ L + GY + + + DG I +G+N SG S +R LT+RR G+ Y
Sbjct: 30 DCGLEAKYSGYKDTDLGIVYVSDGPYIDNGENHQASGDSTTRRPYLTLRRFPTGERNCY 88
>03_05_0029 + 19992040-19992211,19992657-19992856
Length = 123
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 43 HVRAAAGLREWTSAGVDKDIVGAPDADRG 129
H + G R W S +D +VG+PDAD G
Sbjct: 72 HSQVRMGGR-WVSVAIDVMVVGSPDADEG 99
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 35 VSVTLGLLLACASGQAPVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWS 193
+S L LLL CA+ TR + + + D P+P++VYWS
Sbjct: 238 ISQILALLLECAAAFVYFRTRYAALVASEILQTSNPMKWVTDLAPEPDDVYWS 290
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 194 WTSIRFQVAGTHPLRRADSVRRPRSASGAPTISLSTPALVHSRRP 60
W + A PLR + + R AS +PT+ L+ PA ++S P
Sbjct: 124 WGTTPLPNAIDKPLRPSPLISGRRQASTSPTLPLTVPATMNSGAP 168
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +2
Query: 197 DGVRIASGDNIWISGTSVSRLTIRRVTVGDSGVYVCHADNLYSSHE 334
DG+ + NIWI S+S + + + D + +++ ++ H+
Sbjct: 248 DGISVMGSSNIWIDHVSMSNCSDGLIDITDGSTAITISNSHFTKHD 293
>07_03_0141 + 14249788-14249992,14250240-14250295
Length = 86
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 210 ILTPSLDQYTFSGCGYPSTSQGRLSSAPAVSVGGADNILVDTGACPLAQASS 55
IL+ ++D T + CG +S+ + ++ GG+D+I +T P A S
Sbjct: 17 ILSLTVDSATAAQCGCCISSRAKACCFGCIAAGGSDSICKNTCCFPCILADS 68
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 671 EAIGRGDDLTILRKIINTKIILL*PMVV 588
EA+G D+ T+L K++ TK+ + P+ V
Sbjct: 669 EAVGAEDEDTVLTKVVRTKVFEMPPLSV 696
>01_01_0855 -
6666854-6666969,6667107-6667230,6667679-6667849,
6668171-6668276,6668356-6668532,6669213-6669442
Length = 307
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -1
Query: 237 LIHMLSPDAILTPSLDQYTFSG----CGYPSTSQGRLSSAPAVSVGGADNIL 94
++ SPD + S YT++G C + S G S+PA+SVG + N++
Sbjct: 138 VVKATSPDG--SSSFTAYTYAGELPTCAFGFNSNGVRVSSPAMSVGHSYNLM 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,200
Number of Sequences: 37544
Number of extensions: 426223
Number of successful extensions: 1333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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