Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F08
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757           32   0.44 
07_03_0189 + 14862848-14862904,14862936-14863071,14864436-148645...    31   0.77 
06_02_0216 + 13157377-13157583,13159271-13159339,13160727-131608...    28   7.2  

>08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757
          Length = 202

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 666 IAETVAGVGDQRSDLG-GMGLGQRLGDHRLAGGEGGSVRG 550
           +  TVA VGD+R  +G G G  +R      A  EGGS RG
Sbjct: 2   VTATVAAVGDERGGIGRGRGRLRRTRKREAAAVEGGSGRG 41


>07_03_0189 +
           14862848-14862904,14862936-14863071,14864436-14864593,
           14864640-14865533,14865634-14865792,14866342-14866623
          Length = 561

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 651 AGVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRGMT 544
           +GVG QRS  GG+ L ++L      GG+G    G T
Sbjct: 35  SGVGKQRSRCGGLDLDEQLEQLCAGGGDGDGFTGTT 70


>06_02_0216 +
           13157377-13157583,13159271-13159339,13160727-13160851,
           13160959-13161190
          Length = 210

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 660 ETVAGVGDQRSDLGGMGLGQRLG-DHRLAGGEGGSVR 553
           + V  +GD+  + GG G G     DH +AGG  G VR
Sbjct: 92  QIVMSLGDE-GETGGQGTGSSCRQDHAMAGGLAGGVR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,084
Number of Sequences: 37544
Number of extensions: 174400
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)