Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F07
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    30   1.9  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 29   2.4  
06_01_0008 + 141405-142421                                             28   5.6  
02_05_0494 + 29486960-29487454                                         27   9.9  

>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 141 ADAERKQACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQ 305
           +D + +QAC  +C+   L   C      +P S G+  + N  NC   D   ++ Q
Sbjct: 724 SDQQSQQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFDETVEVHQ 778


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -2

Query: 162 PACAQHQPXPASGPACRDGTTPPRTTQRKHRK*WXXXWNETDEFGGPTC 16
           P  A H    A+GPA   G  PP TT     K      +    FGG  C
Sbjct: 359 PITAVHAAPAAAGPAAAGGLMPPATTVAAFSKPAASLMDSFVPFGGFLC 407


>06_01_0008 + 141405-142421
          Length = 338

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -2

Query: 174 HACRPACAQHQPX-PASGPACRDGTTPPRTTQRKHRK*WXXXWNETDEFGG 25
           H   P    H+P  PAS  A      PPR  +R+ R      W     FGG
Sbjct: 252 HHAHPTLGSHRPAAPASASASPSPAPPPRLAERRFR--ISLPWPLRAAFGG 300


>02_05_0494 + 29486960-29487454
          Length = 164

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 127 RSSLSGRHDTATNNTAKAQKIMGXXLERN**IRW 26
           R    G H+ A NN AKA K  G   E N  +RW
Sbjct: 63  RVRAGGEHEDA-NNAAKAGKASGEEEEENDGVRW 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,415
Number of Sequences: 37544
Number of extensions: 302052
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)