Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_F06
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...   169   5e-43
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   1.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    29   1.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.7  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score =  169 bits (410), Expect = 5e-43
 Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
 Frame = +3

Query: 213 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 392
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76

Query: 393 TYPDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 548
           T+P  +TN CCSHPL +         E  E +  AA+R++ HELGI    +  + F F+T
Sbjct: 77  TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136

Query: 549 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITP 728
           R+HY  P  G WGEHEID+ILFF+  V++  N +E+  Y +V   E        +   TP
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTP 196

Query: 729 WFNMIRRHRLKLWWDNL 779
           WF +I  H +  WW ++
Sbjct: 197 WFKLICEHFMFKWWQDV 213


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 228 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 320
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNRV-----PDGDVTQH 59


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = +3

Query: 441 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 614
           ++ +PE  +     ++  +  I  D   P  F FM  V Y     G+       I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322

Query: 615 FQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 719
               V + PN  +I+  CF     F +  P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 796 SSLMRCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLTSL 620
           SS +   L+  SFN  R  + NH    PSK  +N +++    +     SS F L LT +
Sbjct: 180 SSSISKNLNTSSFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -3

Query: 316 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKXL 137
           SS+S S  +   S   +VP+  S SS+    S S +S+ ++SRPS S  +  T   +   
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS-SSSSFITTMSSSTF 249

Query: 136 XSTLRVLHS 110
            ST+ V  S
Sbjct: 250 ISTVTVTPS 258


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 534 FTFMTRVHYHDPGDGVW 584
           +TFMT  H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 691 LNSALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 575
           L++ +    Y++I +EFG      W  + + ISC+   P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 784 RCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLT 626
           R K S Q    +  +   H  +   K+G+N+  S   T    EISS  GL +T
Sbjct: 449 RIKRSIQDAKDFDDVFTEHESLELKKIGKNDEESLNTTNAVKEISSP-GLVIT 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,938
Number of Sequences: 5004
Number of extensions: 70565
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)