Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F04
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 32 0.34
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 32 0.34
03_01_0378 + 2943605-2943690,2943774-2943920,2944607-2944675,294... 30 1.4
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 30 1.8
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 29 2.4
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844... 29 4.2
11_01_0422 + 3246528-3248606 28 7.3
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 28 7.3
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584... 28 7.3
02_01_0078 - 549625-549766,549961-550490,550592-550744,551036-55... 28 7.3
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229 28 7.3
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 27 9.7
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 27 9.7
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285... 27 9.7
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 27 9.7
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 111 FAMPLGIIGITSTNLVLILKHQKNGLQQLKNME*L*RSILPILKIWAMVIIRSYLILVRT 290
F +PL ++G+ + LVL L Q+NG + L ++ L + +L +M SY + +
Sbjct: 128 FGIPLPLLGLVAYGLVLTLSLQENGKKFLPGIDDLDIRLTLLLISTSMATASSYFLYILN 187
Query: 291 PRIL 302
R +
Sbjct: 188 TRFI 191
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 236 PEDMGYGDYPKLPDIGED 289
PED G G+ P++PD+GED
Sbjct: 62 PEDAGEGEQPRVPDLGED 79
>03_01_0378 +
2943605-2943690,2943774-2943920,2944607-2944675,
2944758-2944923,2945000-2945228,2945335-2945888
Length = 416
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 113 CNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYP 238
CN T +W + + P P K ++ +AA K++ +T T P
Sbjct: 216 CNDTDVYWFFTWSPSPDDKDVDKSSAATKQFVLTKLRSTNVP 257
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 95 KTAALFCNATRNHWNYQYQPGPYPKTPEERAAAAKKY 205
++ L C+ T +WNY + P P EE A + Y
Sbjct: 208 RSGVLPCSDTSVYWNYTWYPSPDDGDAEESVAKMRSY 244
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +2
Query: 158 PYPKTPEERAAAAKKYGMTVEEYTPYPE------DMGYGDYPKLPDIGEDSKDPHYPYDN 319
PYP + + + + G VE YT YP ++ YG Y LP HY +N
Sbjct: 165 PYPV--KVQTLSIRLPGGRVESYTKYPNTKLAESELKYGPYEDLPPFSYSPMVVHYENNN 222
Query: 320 P 322
P
Sbjct: 223 P 223
>10_05_0036 +
8443957-8444112,8446063-8446129,8446685-8446743,
8446855-8446930,8447118-8447189,8447326-8447413,
8447489-8447744,8447934-8448049,8448247-8448470,
8448685-8448716,8448882-8449018,8449200-8449289,
8449383-8449557
Length = 515
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 341 NEPLHATAEIFGGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFLEDYK 493
N+ L A+ D CD+ +SLL W W G F L V DYK
Sbjct: 447 NDYLTNLADSIREDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYYV---DYK 494
>11_01_0422 + 3246528-3248606
Length = 692
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 25 YVSKCKDVFVTEK-----SSVQQLSIHKKNGSSVLQCH*ESLELPVPTW 156
Y+++C VF+ + +S+Q L K + V++ ESLE V TW
Sbjct: 261 YMTECTQVFLVARRNALDASLQNLGYEKASIDDVVRMAWESLESDVATW 309
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 440 KTKSIDAAVKIFALC*CHSDLHQIFLQ*RATVH 342
KT D A+K+ CHSDLH I + R V+
Sbjct: 44 KTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVY 76
>03_02_0139 -
5844107-5844278,5844413-5844521,5844630-5844732,
5844834-5844865,5845211-5845434,5845774-5845889,
5845997-5846252,5846720-5846807,5846891-5846962,
5847096-5847171,5847302-5847360,5848202-5848268,
5848760-5848825,5850466-5850657
Length = 543
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 314 DNPELKRNFNEPLHATAEIFGGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFLED 487
D+ +K + N+ L A D CD+ +SLL W W G F L V +D
Sbjct: 468 DSKRIKYH-NDYLTNLAASIKEDGCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYKD 524
>02_01_0078 -
549625-549766,549961-550490,550592-550744,551036-551182
Length = 323
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 158 PYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGEDS 292
P P P AA + + + PY M Y +Y P++ ED+
Sbjct: 10 PAPPPPPAAAATDEPWITDTLPFVPYDNSMSYTNYCYYPEMFEDA 54
>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
Length = 265
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 164 PKTPEERAAAAKKYGMTVEEYTPYPEDMGYGD---YPKLPDIGEDSKDPHYPYDNPELKR 334
P TP E AAA++ EE Y +MGY +LPD+ SK+P + ++
Sbjct: 71 PVTPSESPAAARRREEDEEERRRYYLNMGYAIRTLREELPDV--FSKEPSFDIYRDDIV- 127
Query: 335 NFNEPLH 355
F +PL+
Sbjct: 128 -FKDPLN 133
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +2
Query: 146 YQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGEDSKDPHYP 310
Y P PYP P+ + + G E Y P P+ Y P++ + YP
Sbjct: 227 YPPQPYPPQPQGQTYPPQPQG---ETYQPQPQRETYPPQPQVQPYPPKPQGQPYP 278
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 545 SNEHPAQESAWL*LVFQFYSLLKTPLEEQILL 450
+ EHP AW+ ++++L KTP EE++L+
Sbjct: 123 NGEHP---EAWIRKANKYFALTKTPEEEKVLV 151
>02_02_0532 +
11227074-11227349,11227567-11227969,11228228-11228506,
11228736-11228838,11228932-11229013,11229260-11229370,
11229621-11229691,11229791-11229803
Length = 445
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 269 LPDIGEDSKDPHYPYDNPELKRNFNEPLHATAEIFG 376
LPD +P YP+D +LK N LH FG
Sbjct: 145 LPDPATKEPEPDYPFD--DLKENTPCKLHVPIRCFG 178
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 470 LEEQILLEYPKTKSIDAAVKIFALC*CH 387
L Q+ L+Y +DAA + LC CH
Sbjct: 1353 LAAQLALKYLHNWDLDAAANVLTLCICH 1380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,342
Number of Sequences: 37544
Number of extensions: 356821
Number of successful extensions: 948
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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