Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_F04
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032644-3|CAA21668.1| 215|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL032644-2|CAA21667.1| 199|Caenorhabditis elegans Hypothetical ... 52 5e-07
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 30 1.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 1.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 30 1.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 30 1.2
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical ... 29 2.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 27 8.6
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 27 8.6
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 27 8.6
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 27 8.6
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 27 8.6
>AL032644-3|CAA21668.1| 215|Caenorhabditis elegans Hypothetical
protein Y51H1A.3b protein.
Length = 215
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 38 VKMSSLLKRALFNNSQSIRKTAALFC---NATRNHWNYQ-YQPGPYPKTPEERAAAAKKY 205
V S+L K NS I++ + F T + W + ++P P EER AAA KY
Sbjct: 14 VSFSALKKWIFLPNSTKIKEKRSSFPVRGPLTFDGWYPRDHKPSAPPTNEEERRAAAVKY 73
Query: 206 GMTVEEYTPYPED---MGYGDYPKLPDIGEDSKDPHYPYDNPELKRNFNEPLHATAEIFG 376
G+ E+Y +D GDYP L I D KDP+ + + + +RN+ E + +
Sbjct: 74 GLRPEDYQSMDKDDVIKFAGDYPDLGVITYDHKDPYEAWTDRQNRRNWGELVPIDMMRYR 133
Query: 377 GDR 385
GDR
Sbjct: 134 GDR 136
>AL032644-2|CAA21667.1| 199|Caenorhabditis elegans Hypothetical
protein Y51H1A.3a protein.
Length = 199
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 146 YQPGPYPKTPEERAAAAKKYGMTVEEYTPYPED---MGYGDYPKLPDIGEDSKDPHYPYD 316
++P P EER AAA KYG+ E+Y +D GDYP L I D KDP+ +
Sbjct: 38 HKPSAPPTNEEERRAAAVKYGLRPEDYQSMDKDDVIKFAGDYPDLGVITYDHKDPYEAWT 97
Query: 317 NPELKRNFNEPLHATAEIFGGDR 385
+ + +RN+ E + + GDR
Sbjct: 98 DRQNRRNWGELVPIDMMRYRGDR 120
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 344 H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 222
H SS P YH+D + PH Q + +HH Y +Y+
Sbjct: 50 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 93
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 344 H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 222
H SS P YH+D + PH Q + +HH Y +Y+
Sbjct: 1690 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1733
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 344 H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 222
H SS P YH+D + PH Q + +HH Y +Y+
Sbjct: 1791 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1834
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -2
Query: 344 H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 222
H SS P YH+D + PH Q + +HH Y +Y+
Sbjct: 1791 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1834
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 260 YPKLPDIGEDSKDPHYPYDNPEL 328
+P LP+ S PH+PY NP L
Sbjct: 530 FPTLPNFPPMSMSPHFPYPNPLL 552
>AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical
protein K04F1.1 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 203 YGMTVEEYTPYPEDMGYGDYPKLPDIGEDSKDPHYPYDNPELKRNFNEPLH 355
YG + +E P P D+G G + P + + +Y ++KR+F+E H
Sbjct: 170 YGFSPKEKQP-PVDLGEGKTKEFPPLDPNGNQENYLEMEGKVKRDFSEYSH 219
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 143 QYQPGPYPKTPEERA--AAAKKYGMTVEEYTPYPEDMGYGDYP 265
Q QP YP+ ++ + A + Y EE PYP Y DYP
Sbjct: 183 QQQPPQYPQQRQQHSYNAGPRTYH---EEPQPYPAKFEYVDYP 222
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 98 TAALFCNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYP 238
+A+ + + TRNHWN Q Y P + T EY+ +P
Sbjct: 324 SASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQT-SEYSSFP 369
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 98 TAALFCNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYP 238
+A+ + + TRNHWN Q Y P + T EY+ +P
Sbjct: 324 SASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQT-SEYSSFP 369
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 98 TAALFCNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYP 238
+A+ + + TRNHWN Q Y P + T EY+ +P
Sbjct: 324 SASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQT-SEYSSFP 369
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 155 GPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYP 265
G YP+ E AAA YG + Y PY GYG YP
Sbjct: 25 GGYPQ--EGYGAAAGGYG-GYDPYNPYGAAGGYGMYP 58
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 155 GPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYP 265
G YP+ E AAA YG + Y PY GYG YP
Sbjct: 25 GGYPQ--EGYGAAAGGYG-GYDPYNPYGAAGGYGMYP 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,122
Number of Sequences: 27780
Number of extensions: 310884
Number of successful extensions: 827
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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