Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E24
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.49 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   2.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   3.5  
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   3.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   8.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.0  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 415 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEV 594
           +K+RLE E    ++    +    R    ++ + RKK   + E +    ++L+E +   E 
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163

Query: 595 LQRRQKQ 615
            QRR KQ
Sbjct: 164 EQRRLKQ 170


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 415 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVV---KLVEYETD 585
           K RR + +E ED++   +KS N  + + ED+KN   +   +    N VV   KL++ +T 
Sbjct: 21  KNRRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79

Query: 586 PEVLQ 600
              +Q
Sbjct: 80  LSSIQ 84


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 469 KSMNSRTHSGEDSKNRK--KLKSDVENEGNLVVKLVEYETD 585
           K +NS   + E+S  ++    KSD E E ++  K  EY+ D
Sbjct: 87  KELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDED 127


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +1

Query: 388 LCETMASCYKKRRLEH-EESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVK 564
           +CET   C+  RR     +S   I  T+K+ N R HS   S     ++          + 
Sbjct: 1   MCETPIGCHTPRRCNRFIDSAALIDCTNKT-NQREHSPSFS-----IEIPTTPSRKRTLA 54

Query: 565 LVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTP 705
              ++T  + ++    ++   K  + Y N+  Q+  NK+ K LP TP
Sbjct: 55  SSHFQTPTKRIKYELGELQEEKTDL-YPNFPAQLKENKKPK-LPTTP 99


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +1

Query: 577 ETDPEVLQR----RQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDM 744
           E DPE L+     R+   +   +T+G ++YV       R+K+ P+   K+ K  + S   
Sbjct: 20  ERDPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSKQAPQLDPKF-KGRKTSRQE 78

Query: 745 LIKLWRKNLHEFDPNXGEVKKECXDANKKVN 837
           L+     N     P+  E  +E  D N  V+
Sbjct: 79  LLNSGSLNSQSSSPSEEEDSEE--DENDAVS 107


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 424 RLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNL 555
           RL+H +S+    + D+  N+   S  + +N KK  S++EN GN+
Sbjct: 78  RLKHTQSD----LIDRFKNANLKSVNE-ENLKKFFSELENHGNI 116


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 439 ESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQI 618
           +SE+ + V    ++ R  S +D    +    DVE   + + ++V    + E+L    ++ 
Sbjct: 675 KSEENVIVQLGKVSYRPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEF 734

Query: 619 D----YGKNTVG 642
           D    Y KN +G
Sbjct: 735 DFPAQYSKNVIG 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,818
Number of Sequences: 5004
Number of extensions: 60936
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)