Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E24
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.22 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 550 NLVVKLVEYETDPEVLQRRQKQIDYGKNT-VGYQNYVQQIPLNKRTKELPKTPDKYLKY 723
           N+   L  Y    E+ Q   + ID+ KNT + Y+N    I   KRT E  +    Y  Y
Sbjct: 399 NVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSY 457


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 144 ISEIKNNYTNNKYMGKLKFRPVH 212
           IS + NNY  N Y     ++P+H
Sbjct: 315 ISSLSNNYNYNNYNN--NYKPLH 335


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 159 NNYTNNKYMGKLKFRPVH 212
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 159 NNYTNNKYMGKLKFRPVH 212
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 206 RAKFKFTHVFVVCVIIFYFAYIRYLI--LWF 120
           RAK +   + V+ + +F+  +  Y +  LW+
Sbjct: 253 RAKIRTLKMTVIIIAVFFICWTPYYVMSLWY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,704
Number of Sequences: 438
Number of extensions: 4380
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)