Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E23
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   182   4e-47
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   182   4e-47
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.6  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   8.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  182 bits (442), Expect = 4e-47
 Identities = 84/129 (65%), Positives = 101/129 (78%)
 Frame = +1

Query: 1   KQATVFLNRKGGMKXKDMRHHKXVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGV 180
           KQ  +F N K G      R +K VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG 
Sbjct: 15  KQPHIFQNAKKGA---GRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGT 71

Query: 181 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSK 360
           V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSK
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSK 130

Query: 361 TVRFNVLKV 387
           TVRFNVL+V
Sbjct: 131 TVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  182 bits (442), Expect = 4e-47
 Identities = 84/129 (65%), Positives = 101/129 (78%)
 Frame = +1

Query: 1   KQATVFLNRKGGMKXKDMRHHKXVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGV 180
           KQ  +F N K G      R +K VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG 
Sbjct: 15  KQPHIFQNAKKGA---GRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGT 71

Query: 181 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSK 360
           V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSK
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSK 130

Query: 361 TVRFNVLKV 387
           TVRFNVL+V
Sbjct: 131 TVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 175 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 354
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 355 SKTVRFNVLKV 387
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 VEIGDIVTIGECRPLSKTVRFNVL 381
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 112 YPQSPLWEF*SLNQHXYGDACPSXSCHLSCSGK 14
           YP    W+     ++     CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,460
Number of Sequences: 5004
Number of extensions: 30382
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)