Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E23
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   190   5e-49
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  190 bits (463), Expect = 5e-49
 Identities = 90/132 (68%), Positives = 103/132 (78%), Gaps = 3/132 (2%)
 Frame = +1

Query: 1   KQATVFLNRKGGM---KXKDMRHHKXVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL 171
           KQ TV LN K  +     K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG IL
Sbjct: 11  KQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMIL 70

Query: 172 TGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRP 351
           TGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRP
Sbjct: 71  TGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRP 130

Query: 352 LSKTVRFNVLKV 387
           LSKTVRFNVLKV
Sbjct: 131 LSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 381 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 277
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 302
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,929
Number of Sequences: 27780
Number of extensions: 178409
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)