Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_E16
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 33 0.073
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 30 0.52
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.68
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 29 0.90
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.4
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 8.4
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 8.4
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 26 8.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 8.4
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 32.7 bits (71), Expect = 0.073
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +1
Query: 652 VEELTILSQNLHSXXXXXXXXXXXXKDENATLKEKVNYLEKERAKYLN------LGMSSN 813
VEELT+ + HS K E LKEK+ +E ER + ++ L
Sbjct: 246 VEELTVQASQKHSHIAEMESSLQTSKQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQ 305
Query: 814 DLSFNFTSLSISNDISNEVNE 876
++ N T +S S ++ N E
Sbjct: 306 TVNENITRISTSIELKNTALE 326
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 29.9 bits (64), Expect = 0.52
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 268 MQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKR 447
++ HQS++ + + KLT+S L L +L KQK + K E++ K +
Sbjct: 281 LKSHQSSSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEF----KNNLVVHT 336
Query: 448 LGKEPISNLQGHDYAQLQIAIY 513
L KE +S ++ D +Q++ +
Sbjct: 337 LAKEKVSFVRIIDLIFVQLSTW 358
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = +1
Query: 181 KMESHPLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQH 360
+++ HP N ++ R A + YD ++ E + ST E
Sbjct: 326 QLDEHPHNFTQRELREARRIIPQFSYDPPGASGRNRRER-TSSTPSEQSTSVNETANSLS 384
Query: 361 SYHLKQKDLIKYKKEQYVRVKKA 429
+ HL + ++ ++E+YVR ++A
Sbjct: 385 NLHLSRGEIAHLRQEEYVREQQA 407
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 340 EAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGK 456
E +++ H KQK +YKK ++ KKA IK+L K
Sbjct: 45 EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEK 83
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 190 IPFWCHPFTFNNWNQKELPSL 128
+P W F NW+ LPSL
Sbjct: 452 LPIWLTEFACTNWDDSNLPSL 472
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 733 ENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISNEVNER 879
+ L+EK+ +LE+ER+ ++ S FN+ + + + NE+ ER
Sbjct: 957 QTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQD--KNELEER 1003
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 745 LKEKVNYLEKERAKYLNLGMSSNDLSFNF----TSLSISNDISNEVNER 879
L+ +V YLE K N +SSN SF F +N++ N ER
Sbjct: 77 LESRVRYLETLLKKNTNFDLSSNSPSFLFFLREQKFQATNELENMSPER 125
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 434 SMAFLT-LTYCSFLYFIKSFC 375
S+AF+ L YCSF +FI C
Sbjct: 432 SLAFIVCLKYCSFYFFIGPIC 452
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 730 DENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSL 840
D+N +L+++V YLE E K L + N L+ F L
Sbjct: 106 DDNVSLEKRVEYLETENTK---LVKTLNSLNSEFLQL 139
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 745 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLS 843
+K K+ YL+ A++ N S+N+ NF L+
Sbjct: 158 IKGKIYYLQAREARFRNTNESTNERVKNFAYLT 190
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 727 KDENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISN 852
K+ A+LK ++N+LEKE + + +N+ ++ + IS+
Sbjct: 341 KEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISD 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,778
Number of Sequences: 5004
Number of extensions: 49559
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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