Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_E15
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0463 + 9586015-9586233,9586330-9586400,9587026-9587116,958... 31 1.1
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 30 1.8
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 3.2
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911... 29 5.6
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 29 5.6
12_02_0879 + 23960084-23961551,23961796-23962184 28 7.4
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 7.4
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 9.8
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 28 9.8
02_05_1173 - 34686009-34686090,34686276-34686342,34686707-346867... 28 9.8
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 9.8
>09_02_0463 +
9586015-9586233,9586330-9586400,9587026-9587116,
9587322-9587331,9587796-9587863,9588695-9588847,
9588931-9589566
Length = 415
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/90 (18%), Positives = 44/90 (48%)
Frame = +3
Query: 219 FVKEKQLDGRKIADVTEGIVKLWRPQSNAKKFIAFLEDLKRDPDKYLNTSESIDDKSEAE 398
F++ L +K++ + +W P+ N K ++ D+ ++ ++ L +E DK+ +
Sbjct: 71 FIERLLLQDKKLSTSFYIQLNMWTPKRNKLKICGWIMDMSKNLEETLLVNERNMDKNSLK 130
Query: 399 MALIESQYQTVKKKGTEELGNVNNSIEDLL 488
A+ +V + + + N +S++ +L
Sbjct: 131 GAIDHEACSSVVGRTAQTMHNCKSSMDLVL 160
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 495 LVPVKSFLYRNQPK--QINKAAPSYLPMKPVSPKRSKKFFRLNSYEYPLFDLR 647
L+P+ +F + P +AAP+ P P P S KF N+Y Y L DLR
Sbjct: 12 LLPLLAFSLDDAPHLHYCTEAAPTTPPPPPPPPPFSFKFDFSNTYTYRLEDLR 64
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +3
Query: 309 KFIAFLEDLKRDPDKYLNTSESIDDKSEAEMALIESQYQTVKKKGTEEL---GNVNNSIE 479
+++++ ++L DK + +++ + +++ LI+ + VK T E N NS++
Sbjct: 362 RWLSYSDNLIAGEDK--RSEVLVENANPSDLELIDVEDNGVKPSATLETKGTSNYQNSVQ 419
Query: 480 DLLKKLVPVKS--FLYR--NQPKQINKAAPSY 563
D+ K LVP S LY+ P+ +N+ A Y
Sbjct: 420 DVPKILVPKISDPSLYKPPPDPRIVNQQATRY 451
>07_03_0584 -
19690474-19690589,19690763-19690909,19691068-19691116,
19691240-19691365,19691473-19692651
Length = 538
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 318 AFLEDLKRDPDKYLNTSESIDDKSEAEMALIE----SQYQTVKKKGTEELGNVNNSIEDL 485
A L++ R +K + ++ ++ +K E + LIE Y T K K ++ ++ ++DL
Sbjct: 351 ACLDNGARVLEKLIASAAALVEKIELKRGLIEMNTHESYFTKKAKLDIDILQLDAEVDDL 410
Query: 486 LKKLVPVKSFLYR 524
KKLV V + YR
Sbjct: 411 KKKLVEVCTCDYR 423
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 324 LEDLKRDPDKYLNTSESIDDKSEAEMALIESQYQ--TVKKKGTEELGN 461
+E + DP YL E DD S+ E + ES+ TVK K ++ N
Sbjct: 157 IEGIHLDPSIYLMDEEKRDDNSKMEKKVAESENSPATVKSKTEKQQEN 204
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 336 KRDPDKYLNTSESIDDKSEAEMALIESQYQTVKKKGTEELGNVNNSIEDLLKKLV 500
+R D ++ S+ E+ ++ ++Q V+ K E G +NN IE+ KLV
Sbjct: 560 RRKSDSAASSGSKDSGSSKPEVVIL--RHQDVRDKKKNEQGLLNNVIEETASKLV 612
>07_03_1723 -
29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 543 NKAAPSYLPMKPVSPKRSKKFFRLNSYEYPLFDLRSRLKQETTDKYYPMKRT 698
+K++PS P+KP S S FR + E S L QE+ DK P RT
Sbjct: 647 SKSSPSISPIKPSSAGPSSTGFRTGNLEAFPTSRGSPLPQESIDK--PHDRT 696
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +3
Query: 327 EDLKRDPDKYLNTSESIDDKSEAEMALIESQYQTVKKKGTEELGNVNNSIEDL 485
ED+ +D + ++ +++ DD++ E+ + + V GTE + ++ E+L
Sbjct: 4493 EDVDQDTNDLMDKADAYDDRTAPELPEPKDDSEDVDMDGTEHIDEMDADGEEL 4545
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +3
Query: 372 SIDDKSEA---EMALIESQYQTVKKKGTEELGNVNNSIEDLL 488
+ID+K++A E+A E+ +K+KG++ G +NN + +L
Sbjct: 472 TIDNKTKADLEEVATAEADILNLKQKGSDLRGQLNNQAQRML 513
>02_05_1173 -
34686009-34686090,34686276-34686342,34686707-34686758,
34687111-34687172,34688380-34688416
Length = 99
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 477 EDLLKKLVPVKSFLYRNQPKQINKAAPSYLPMKPV 581
E LL K + V+ FLYRN+ K + S L KP+
Sbjct: 58 EKLLSKCLVVELFLYRNREKTDDVVIVSALNRKPM 92
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 249 KIADVTEGIVKLWRPQSNAKKFIAFLEDLKRDPDKYLNTSESIDDKSEAEMALIESQYQ 425
++AD + L SN+K++I+ + + KR + E +K+ E+A+ S+++
Sbjct: 976 QLADALSSLKVLEDELSNSKEYISSISEEKRQMQLHTAAVEEELEKTNEELAIYASKFE 1034
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,373,695
Number of Sequences: 37544
Number of extensions: 411448
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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