Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E14
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   5.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   8.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 261 PDLLSYFAIVENESKARVKFNLM 329
           P+LL YFA +    K + + NL+
Sbjct: 830 PNLLRYFASIATNPKEQAQLNLL 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 241 QESRCWFISHSYFV 200
           +++R W I+HSYF+
Sbjct: 223 EQNRSWRITHSYFM 236


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  SMNPFCFGLLPT*YQY*LN*NINDFNKHLAFKN 119
           S  P     L   Y+Y    N N++NK L +KN
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKN 108


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 834 NLFNNFTFIHNKNGKKNLFNI 772
           N +NN+   +N N KK  +NI
Sbjct: 335 NNYNNYNNNYNNNYKKLYYNI 355


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   CYVFVYESFLFWAATYVISILAELEYKRFQQ 100
           C+V V+ S L +A    ++   ++   RFQ+
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQMRKNRFQK 320


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   CYVFVYESFLFWAATYVISILAELEYKRFQQ 100
           C+V V+ S L +A    ++   ++   RFQ+
Sbjct: 290 CFVMVFASLLEYATVGYMAKRIQMRKNRFQK 320


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 825 NNFTFIHNKNGKKNLFNI 772
           NN+ + +N N KK  +NI
Sbjct: 94  NNYKYNYNNNCKKLYYNI 111


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 843 VNHQNCKIRKYIH 881
           ++H NCKI + +H
Sbjct: 400 LHHPNCKINRKVH 412


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   CYVFVYESFLFWAATYVISILAELEYKRFQQ 100
           C+V V+ S L +A    ++   ++   RFQ+
Sbjct: 229 CFVMVFASLLEYATVGYMAKRIQMRKNRFQK 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,689
Number of Sequences: 438
Number of extensions: 5047
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)