Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E12
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    53   5e-08
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    46   5e-06
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    44   2e-05
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    44   2e-05
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    44   3e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    40   5e-04
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    34   0.023
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.7  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
 Frame = +2

Query: 344 ALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTR 523
           AL    DV    Q++ A+++ ++    ID+L+NNA     T   Q   + +D   ++  R
Sbjct: 47  ALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLR 106

Query: 524 GTFLASKICLP-VLKNSNHAHILNLSPPLNMNPYWFSIHVAYTMAKYGMSMCVLGMSEEF 700
           G +L  +  +P + K      I+N+    ++N + +    AY+ AK G+      ++  +
Sbjct: 107 GNYLTQRYVIPHMAKQGKGGSIVNIG---SVNGHIYLGSPAYSAAKAGLENLTKALAVRY 163

Query: 701 KPFNIGVNALWPKT 742
            P  I VN   P T
Sbjct: 164 GPLGIRVNVCAPGT 177


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
 Frame = +2

Query: 161 KLAGRTLFITGASRXXXXXXXXXXXXXXX-NVVIAAKTAEPHPKLPGTIYTAAEEIEA-L 334
           +L G+T+ ITGAS                  +++AA+          T+   A+E+E+  
Sbjct: 3   RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFS-------TVEEIAKELESKY 55

Query: 335 GGKALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNAS-AISLTGTAQTDMKRYDLMHN 511
               LP  +DV D K +   ++   K+F  ID+L+NNA  A+        ++     M  
Sbjct: 56  EVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMIT 115

Query: 512 INTRGTFLASKICLPVLKNSNHAHILNL 595
            N  G    ++  LP+  + N   ILN+
Sbjct: 116 TNVLGMMAMTRAVLPIFYSKNKGDILNV 143


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = +2

Query: 359 VDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTRGTFLA 538
           +DV +   ++K+V++A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 539 SKICLPVLKNSNHAHILNLS 598
            K   P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = +2

Query: 359 VDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTRGTFLA 538
           +DV +   ++K+V++A+  F  ID+L+NNA     +    T  ++   + N N  G    
Sbjct: 21  LDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV 80

Query: 539 SKICLPVLKNSNHAHILNLS 598
            K   P+ ++ ++  I+N+S
Sbjct: 81  IKAITPIFRSQHNGMIINVS 100


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
 Frame = +2

Query: 311 AAEEIEALGGKALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQT-DM 487
           A + I     K L   +DV D K V+ A  +A ++F  +DI++NNA    L G  ++ ++
Sbjct: 38  APDTITIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNA-GYGLVGEFESYNI 96

Query: 488 KRYDLMHNINTRGTFLASKICLPVLKNSNH-AHILNLSPPLNMNPY-WFSIHVAYTMAKY 661
           +      N+N  G    +K  L +++ S     IL +S      P    S++ A   A  
Sbjct: 97  EEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVE 156

Query: 662 GMSMCVLGMSEEFKPFNIGVNALWP 736
           G+S  +  M E    +NI +  + P
Sbjct: 157 GLSQTI--MRELDPNWNIAITIVQP 179


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
 Frame = +2

Query: 395 VDEAVKKFNGIDILVNNASAISLTGTAQ-TDMKRYDLMHNINTRGTFLASKICLPVLKNS 571
           VD A+KK   ID+LVNN +   +  + +  D +++DL    N    F  +K  +  +K+ 
Sbjct: 112 VDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSG 171

Query: 572 NHAHILNLSPPLNMNPYWFSIHVA-YTMAKYGMSMCVLGMSEEFKPFNIGVNALWP 736
             + I+N S   ++N Y     +  YT  K  ++    G+S ++    I VNA+ P
Sbjct: 172 --SSIVNCS---SINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAP 222


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 31/136 (22%), Positives = 55/136 (40%)
 Frame = +2

Query: 164 LAGRTLFITGASRXXXXXXXXXXXXXXXNVVIAAKTAEPHPKLPGTIYTAAEEIEALGGK 343
           L G+   +TG+S                 V +A +  E + K+   I+      E    K
Sbjct: 40  LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHD-----EVRHSK 94

Query: 344 ALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTDMKRYDLMHNINTR 523
                +D+ D + V +A +  + K   + ILVNNA  ++       D   Y+L    N  
Sbjct: 95  IRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKD--GYELQIQTNYL 152

Query: 524 GTFLASKICLPVLKNS 571
             +L +++ LP L+ +
Sbjct: 153 SHYLFTELLLPTLRRT 168


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 732 HRALTPILNGLNSSLMPSTHIDIPYL-AIVYAT*IENQYGFMLRGGD 595
           HR L  ILN  N S+     ID+P   A+ + T +E  +   + G D
Sbjct: 624 HRNLKRILNNRNKSISSGEGIDMPTAEALAFGTLLEEGHHVRVSGQD 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,040
Number of Sequences: 5004
Number of extensions: 70432
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)