Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E12
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    46   5e-07
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              26   0.53 

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 46.0 bits (104), Expect = 5e-07
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
 Frame = +2

Query: 308 TAAEEIEALGGKALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTD- 484
           T  EE+++  GK +P   D+ ++  + K ++   K    IDIL+NNA+ I++  T Q D 
Sbjct: 46  TLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNAT-INIDVTLQNDE 104

Query: 485 MKRYDLMHNINTRGTFLASKICLPVLKNS--NHAHILNLSPPLNMNPYWFSIH-VAYTMA 655
           +  +  + +IN  G     +  L ++K    N+  I+N++    +N    + +  AY  +
Sbjct: 105 VLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLAS 164

Query: 656 KYGMSMCVLGMSEEFK--PFNIGVNALWPKTAIATAAIEMLTGDTSTSRKPEIVSDAXYL 829
           K  ++     +  E      NI V ++ P         + L  ++  + KP+ VS+    
Sbjct: 165 KCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLF 224

Query: 830 ML 835
            L
Sbjct: 225 AL 226


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 359 VDVRDEKQVQKAVDEAVKKFNGID 430
           +DV DEK VQ   +  +KKFNG D
Sbjct: 52  IDVEDEK-VQLFSECLIKKFNGYD 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,907
Number of Sequences: 438
Number of extensions: 4815
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)