Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E11
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -3

Query: 552 SVNCRRNSSTSTCNRTLCSKRPCTAGGDPLPSFSSKK*ILNFK*KFSFRNPFNCSSYCFM 373
           SVNC R S   T  R L S          L +  + K IL+        N    S Y F+
Sbjct: 423 SVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFL 482

Query: 372 -LIPLIFVTS 346
             + LIF++S
Sbjct: 483 ERLNLIFMSS 492


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -3

Query: 552 SVNCRRNSSTSTCNRTLCSKRPCTAGGDPLPSFSSKK*ILNFK*KFSFRNPFNCSSYCFM 373
           SVNC R S   T  R L S          L +  + K IL+        N    S Y F+
Sbjct: 461 SVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFL 520

Query: 372 -LIPLIFVTS 346
             + LIF++S
Sbjct: 521 ERLNLIFMSS 530


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 123 YTRKLFLFNNVSRNKSLYLIHYLITTNKSP 34
           Y  K + +NN + NK LY  +Y+I   + P
Sbjct: 100 YNNK-YNYNNNNYNKKLYYKNYIINIEQIP 128


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 662 KKAADPHDETTEK 700
           ++  DPHDET +K
Sbjct: 181 RRTPDPHDETAKK 193


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
 Frame = -1

Query: 779 NPHCSLSPL---SNHPQTPI---PHTYRRRHPASLLSRHVDRRPFSSKRYCSW 639
           +PH   SP     NH   P    PH +      SL   H  + P  S+ Y S+
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSY 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,146
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)