Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E09
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0460 + 19360075-19360320,19361189-19361368                       31   1.1  
12_01_0016 + 125052-127145                                             29   3.5  
08_02_1326 - 26158279-26159712                                         28   8.0  

>12_02_0460 + 19360075-19360320,19361189-19361368
          Length = 141

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +1

Query: 487 IAGVKNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLTGTSTEATVGELVDSMSPE 663
           ++ + N L+   K IASG+ +     T ++L  +A DVG+T       +  LV++ +PE
Sbjct: 52  VSFIANKLETIWKGIASGEYTNFSLKTTLFLCSLAEDVGVT-PHVVLVIAGLVEACAPE 109


>12_01_0016 + 125052-127145
          Length = 697

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 695 LILYFFFFDGC-SGLIESTSSPTVASVLVPVKPTSDATPNKYTCVLSI*NDT*PEAIFFL 519
           L+L  FFF G  SG   + SSP  AS       T+DA       +LS+  D   +A + L
Sbjct: 23  LVLVPFFFSGSGSGTNNTASSPAAASSTHTHTHTADANAQLDAHLLSLLRDGHTDAAYHL 82

Query: 518 LFCSEFLTPAMVASHR 471
              +  L  + V++ R
Sbjct: 83  FASNPSLPLSPVSASR 98


>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 628 TVGELVDSMSPEQ--PSKKKKYNINNAEILPVSLILKVTKDILSDKLXKTAVKM 783
           T GE   + S ++  P+  + YN+ N   +PV+ ++ + + +L  K  K  V M
Sbjct: 360 TAGESTGTKSGKKRGPAPLRVYNLGNTSPVPVTRMVAILEKLLGRKANKRVVTM 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,864
Number of Sequences: 37544
Number of extensions: 367011
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)