Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E09
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   2.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   8.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 803 GFLXVVIIFTAVLXNLSDKISFVT-FSIKLTGNISALLILYFFFFDGC 663
           GFL +++IF +V  N+   ++  T   ++  GN+    +     F GC
Sbjct: 29  GFLFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFVGC 76


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 670 SKKKKYNINNAEILPV 717
           SKK  YNI N E +PV
Sbjct: 320 SKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 670 SKKKKYNINNAEILPV 717
           SKK  YNI N E +PV
Sbjct: 331 SKKLYYNIINIEQIPV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,430
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)