Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E08
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   329   3e-91
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    28   2.0  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   8.2  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  329 bits (809), Expect = 3e-91
 Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 6/253 (2%)
 Frame = +1

Query: 121 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 288
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 289 FFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLT 468
           FFSHRD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLT
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123

Query: 469 DDEKVLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQ 645
           DDEK L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI 
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIA 181

Query: 646 KCVTYNQVKGIFGFGDSDVIGKITFPSIEAAPAFSTTFPFIFEN-KIVHCLVPCAIDQDP 822
           KC+T NQ K  FGF DSD IGKI F SI+AAP+FS++FP IF   K + CL+PCAIDQDP
Sbjct: 182 KCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDP 241

Query: 823 YFRMTRDVAVRLK 861
           YFR+TRDV+ RLK
Sbjct: 242 YFRLTRDVSGRLK 254


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 595 DFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIE 732
           DF+ +C   +QN+  I  C TYN  K   G  D ++I  +  PS++
Sbjct: 41  DFLAKCKTEFQNVKAI--CRTYNS-KFYMGIFDKEIIDNLP-PSVK 82


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 103 NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 252
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 720 ECNLANDIRITETEYALYLVVCDTFLYP*HVLVKSWA 610
           +CN+   I    T      V+CD  + P  V++K WA
Sbjct: 164 DCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWA 200


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 601 IGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPS 726
           + + PA Y N  +    +TY+   GIF     D I +I FP+
Sbjct: 27  VSKIPAVYSNDNKFV-FLTYDTFIGIFSLITGDCINRIFFPN 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,718,671
Number of Sequences: 5004
Number of extensions: 80926
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)