Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E08
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-10|CAB60439.2|  417|Caenorhabditis elegans Hypothetical...   343   1e-94
AL021470-5|CAE17953.1|  417|Caenorhabditis elegans Hypothetical ...   343   1e-94
AB096635-1|BAC76735.1|  417|Caenorhabditis elegans tryptophanyl-...   343   1e-94
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U80843-8|AAB37963.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.7  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL132853-10|CAB60439.2|  417|Caenorhabditis elegans Hypothetical
           protein Y80D3A.1 protein.
          Length = 417

 Score =  343 bits (843), Expect = 1e-94
 Identities = 152/249 (61%), Positives = 198/249 (79%), Gaps = 1/249 (0%)
 Frame = +1

Query: 118 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 297
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 298 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 477
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 478 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 657
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V 
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206

Query: 658 YNQVKGIFGFGDSDVIGKITFPSIEAAPAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRM 834
            NQ + IFGF   D +GK  FP++EAAP F+++FP IF +   + CL+PCAIDQDP+FRM
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFPAVEAAPCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRM 266

Query: 835 TRDVAVRLK 861
           TRDVA RLK
Sbjct: 267 TRDVAPRLK 275


>AL021470-5|CAE17953.1|  417|Caenorhabditis elegans Hypothetical
           protein Y80D3A.1 protein.
          Length = 417

 Score =  343 bits (843), Expect = 1e-94
 Identities = 152/249 (61%), Positives = 198/249 (79%), Gaps = 1/249 (0%)
 Frame = +1

Query: 118 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 297
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 298 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 477
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 478 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 657
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V 
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206

Query: 658 YNQVKGIFGFGDSDVIGKITFPSIEAAPAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRM 834
            NQ + IFGF   D +GK  FP++EAAP F+++FP IF +   + CL+PCAIDQDP+FRM
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFPAVEAAPCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRM 266

Query: 835 TRDVAVRLK 861
           TRDVA RLK
Sbjct: 267 TRDVAPRLK 275


>AB096635-1|BAC76735.1|  417|Caenorhabditis elegans
           tryptophanyl-tRNA synthetase (cytosolic)protein.
          Length = 417

 Score =  343 bits (843), Expect = 1e-94
 Identities = 152/249 (61%), Positives = 198/249 (79%), Gaps = 1/249 (0%)
 Frame = +1

Query: 118 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 297
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 298 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 477
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 478 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 657
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V 
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206

Query: 658 YNQVKGIFGFGDSDVIGKITFPSIEAAPAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRM 834
            NQ + IFGF   D +GK  FP++EAAP F+++FP IF +   + CL+PCAIDQDP+FRM
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFPAVEAAPCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRM 266

Query: 835 TRDVAVRLK 861
           TRDVA RLK
Sbjct: 267 TRDVAPRLK 275


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 472 DEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFI 582
           +E ++W    +  +  +  N+ KDI+A+ F P + +I
Sbjct: 430 NEVIVWSTHSLRSSLTLTDNDIKDIVAVNFVPGDNYI 466


>U80843-8|AAB37963.1|  250|Caenorhabditis elegans Hypothetical
           protein C32B5.7 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 772 ENKIVHCLVPCAIDQDPYFRMT 837
           E +I+ CL  CAI+ DP   MT
Sbjct: 117 EQQIIDCLGGCAIESDPMMAMT 138


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 61  VKNLNNKMAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK 213
           V N+  K  +DK    A+A++E+F       G  D+G++++ ++  +  +K
Sbjct: 407 VLNIAQKYQKDK-YKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKK 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,283,572
Number of Sequences: 27780
Number of extensions: 442050
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)