Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E04
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    33   0.033
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    28   1.2  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   6.6  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   8.8  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    25   8.8  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 389 KLCHELHTILKRVTTIDSIK*ISYLYPKTYTFNEYLNKFNCVHAL 255
           ++C    T ++R+  ID+I+  S  +P T+ F+   ++F  +H L
Sbjct: 855 EMCMTFSTSMERIRIIDTIRSPSISFPSTFPFSRASHEFKVIHCL 899


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 465 MFIKLTKTHECVHYFCLIIKLSVDLS 542
           +FIKL+  +EC+ Y  +I K++ +LS
Sbjct: 6   IFIKLSSLNECIKYSTIISKIARELS 31


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 647 SMDFYNTPNIDXTFL-MLTRQKS 582
           S+DFYN+ N+D   L MLT Q S
Sbjct: 203 SIDFYNSNNVDIPALSMLTSQTS 225


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -1

Query: 530 AKLYN*TKVMYTFMGFG*FNKHFYQMGSTVKASST*NTKKYTVTLSSKLCHELHTILKRV 351
           A+LY   K   T  GF  F+      G TVK   +  TKK   T  S   H    +   V
Sbjct: 101 AELYIEEKAAATKDGFFVFSGPLVAEGDTVKIERSKKTKKKKKTSLSNATHPAPAVSAVV 160

Query: 350 TTIDS 336
            + D+
Sbjct: 161 ASADA 165


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 401 TLSSKLCHELHTILKRVTTIDSIK*ISYLYPKTYTFNEYLNK 276
           +LS     E   + + +  ID +K ++  YPKT++  ++  K
Sbjct: 123 SLSWNRTGEYEAVTQTLQQIDVVKRMALYYPKTFSLTDHSGK 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,586
Number of Sequences: 5004
Number of extensions: 55450
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)