Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E04
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.1  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 302 YTFNEYLNKFNCVH-ALNPKSVFQTSFFDQRIQTF*SVNRTA 180
           YT   Y  + NC + AL P SV Q       +  F S  RTA
Sbjct: 206 YTLRNYGRRINCTYVALYPSSV-QVIALGVGVSNFLSSTRTA 246


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 636 LQYTKYRXNFLNVNSTKIVTSKTKE 562
           +QY +++ N L  N  KIV  K +E
Sbjct: 330 IQYAQHKENELYANLMKIVHEKQQE 354


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 636 LQYTKYRXNFLNVNSTKIVTSKTKE 562
           +QY +++ N L  N  KIV  K +E
Sbjct: 368 IQYAQHKENELYANLMKIVHEKQQE 392


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 499 THSWVLVSLINISTKWDPQ 443
           T+ WV  S  +   KWDP+
Sbjct: 73  TNLWVEQSWYDYKLKWDPK 91


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 316 CTLKPIHLMSI*INSIVSTL*TLKVFFKPVFLTNEYKPFRA*TELHCSLLL 164
           CT +   ++ +  N+  + L   K   K   +T +  PFR   E H  L L
Sbjct: 71  CTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,995
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)