Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_E03
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 157 1e-39
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 155 6e-39
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.089
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 1.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.1
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.4
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.4
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 7.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.7
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 157 bits (381), Expect = 1e-39
Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +1
Query: 52 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 231
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 232 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 405
+I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 406 RYKSGKNKWFFQKLRF 453
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 155 bits (375), Expect = 6e-39
Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +1
Query: 52 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 231
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 232 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 405
+I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 406 RYKSGKNKWFFQKLRF 453
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.089
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 43 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 144
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 223 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 357
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 87 QHYFTRLHYFAHLGGIFPLLVD 22
Q YFT ++ F G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 58 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 141
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 158 LSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 30
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 354 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 253
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SRITTKVPPTSHTGMPSSLVSTGT 199
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 316 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 450
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 205 KVHKRMGKNKIHKRSKIKPFVKVV 276
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 339 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHP 217
CAKF E N + WH YNL R Y + D + P
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLP 809
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 310 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 426
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 310 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 408
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,284
Number of Sequences: 5004
Number of extensions: 42111
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -