Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E03
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.93 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   1.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    24   1.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   3.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 134 ITTKVPPTSHTGMPSSLVSTGTP 202
           IT + PP  HT      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 339 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGP 244
           C K   +   C   W     +Y  D+ LYL P
Sbjct: 115 CKKEVTSTEGCEVAWQFGKCIYENDKELYLAP 146


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 339 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGP 244
           C K   +   C   W     +Y  D+ LYL P
Sbjct: 89  CKKEVTSTEGCEVAWQFGKCIYENDKELYLAP 120


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 109 PRTGHLGPALLYP 71
           PR  H+GP+ L+P
Sbjct: 139 PRFRHIGPSTLFP 151


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 339 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFI 229
           C+ +F+  +    C H VIV+ ++     L  LV+FI
Sbjct: 53  CSPYFRELLKSTPCKHPVIVLQDV-AFSDLHALVEFI 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,702
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)