Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E02
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.52 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.69 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 601 CLSSDSLHVSMVILSLLREIAMHFSLEPCFSSFVLGS 491
           CL+S+S  V+    SL   +   + LEP   +F  GS
Sbjct: 678 CLASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGS 714



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 563 DHHGNVQRIRRQAEMDNGEFQC 628
           DH+  V RI    + D G +QC
Sbjct: 369 DHNEAVLRIESVRKEDKGMYQC 390


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 111 YQRVGNDKGDYGDVSSRKTLRKNLGCKSFEWYLKN 215
           Y  V N   +  +VSS     K   C+ F+ Y+K+
Sbjct: 43  YSPVSNSDSENSEVSSNSYTPKIKSCRPFKAYIKD 77


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = -2

Query: 324 GDLTCGLESPDKSFGSQYCVSLHEQPILQG*TIPDRCFSSTIRKICSRDFFSEFCGC*HH 145
           G+L    +   K++     V + +  + +G  +P+ C       + S D    + G    
Sbjct: 167 GELRRAFDKEGKNWEITMAVPIAKFRLQEGYHVPELCELLDAIHVMSYDLRGNWAGFADS 226

Query: 144 RSPLYRYLH 118
            SPLY+  H
Sbjct: 227 HSPLYKRPH 235


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 198 EWYLKNIYPELFIP 239
           +W L NIY +L +P
Sbjct: 510 QWILDNIYDQLIMP 523


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 228 LFIPGESVAHGEIRNIGFQKICLDSPTRKSDHHKPVGLYPCHRQG 362
           ++I  ESV  G+ +     ++    P  +S  ++PV +   HR G
Sbjct: 162 MYINTESVLDGDWKKCFNIRLKRAGPRTESAVYEPVRIMGVHRPG 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,335
Number of Sequences: 336
Number of extensions: 4476
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)