Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E02
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   1.8  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    28   1.8  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.3  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    25   9.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   9.4  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   9.4  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 774 HLTTSDPYNTXTSLTQVFIIKSLNLK*IRFLRRPLAT 664
           H T  D  +  ++ T VF+ K LN    RFL   LAT
Sbjct: 37  HFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLAT 73


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 63  SVRLAEVWLDDYAKYYYQRVGNDKGDYGDVSSRKTLRKNL 182
           S R+ E +LDD  ++ + R  +DK D   +S+ K++ +++
Sbjct: 308 SERIVECYLDDENRWRFLRFRDDKRDANHISTVKSVLQSI 347


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 444 QHRARNSPSKFHRDVSLRFSNTSSTD 367
           +H A+NSPSK  R  S+  +  +STD
Sbjct: 193 KHAAKNSPSKKKRKTSVATAEDASTD 218


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 287 LLEANIAYLSMSNRFSRDKQFRIDVF-----QVPFERFAAEIFSQSFAAADITVV 138
           L E N AYL   N+F  +  FR   +     +   ++FA E +S++ A  DI  +
Sbjct: 513 LAEINAAYLMDENKFLINSVFRYFNYTQSEQEAAHDKFAYEFYSRAAAQGDIDAI 567


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 588 SEDRQKWTMENFNAERLSPELIAE 659
           SED Q W+ E  N ER+   L+++
Sbjct: 2   SEDPQSWSKERKNCERVKRALMSQ 25


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  RTGVNVLKKNSVRLAEVWLDDYAKYYYQR-VGNDKGDYGDVSSRKTLRKNLGCKSFE 200
           + G N +K NSV +A+ +L+   +  + R + +D+         K LR   G K FE
Sbjct: 327 KVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTGEKLFE 383


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 586 SLHVSMVILSLLREIAMHFSLEPCFSSFVLGSYNH 482
           +L+++ V L + RE+   + LEP  S  V G  +H
Sbjct: 180 ALYITHVYLEVCRELVQTYRLEPAGSHGVWGLDDH 214


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 63  SVRLAEVWLDDYAKYYYQRVGNDKGDYGDVSSRKTLRKNLGCKSFEWYLKNI 218
           S +L   W DD+A+Y    +           S+KTL  +   +S +  +  I
Sbjct: 770 SKKLLSSWRDDFAQYITNSIKQPPNSESKGQSKKTLLHDSNMESLKSVISRI 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,107
Number of Sequences: 5004
Number of extensions: 74515
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)